RNA id: TU48385


Basic Information

Item Value
RNA id TU48385
length 2230
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G36106
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 5276453 ~ 5278682 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CtggattattatttaaaaataataggAAAATGTATTGTCCCAAAAAATGTCACGCCGATTTGTTGAAAATGACAAACCCTATGAGTGTATGTTGTACAACATAATAAAAAGGCAATACAAACAAAATCTGTGCAGAGCAAACAAACCTGAAAtctaaaatattacagtagCACATCTTTACATTTCATCACAACAACATTAACAACATATTGTCTCTTATACTTTTAATCCATCAGCGGTGCATCGTATGAAGGTGACAACTAACTCAAAACTTGTCTCCCACAAATTATGTTCATCTACAACTATTTTGAAATACATCTTGATTACGGTCAATGTAATAATGTTGTAATGCAGATTACGGTATGTTCATCATCATAGACAACTGACTGTAAATTATCTACAAATGATTCAGTGTTATTATGTGATATCCTGTCAAGGTATGTTGCAGTAAAATAGCTAAATATGAAGgctgttgttttccaaaaatgtcctGTTTATGTTGGATGGAATATGTTTAATGACAAAAATTGTTTCTTTGATCAAATCATACATGTGCAACTAGGTAAGATGCAGTTTCCCTTTTCAGTATTCTGTATGTATTGACTTTGTTCTGGTGGATGCTAATGTTAACGTTTTGTGAAAAGCGCACTAAATGCACAAGGTTTAGGAACACCTTTATACTGGTGTAACAAATGTATATAGGAGGTGTCCCATCTTATGCCATTTCTCGACACtaaattacataaaatacaattttacaaaGACATTCTGTTTGATAAGCCTGCTTTTGcaaaataattacaatttgtAGAATATAAACTTGATAAGGCATAACAGCTTTGTTAAACACGTCAAGAATTCATCTTATCTGGGTTTGCATCTGTTCCTAATATACAACCTATATAAGCAGCATCTCCAAGTGTTTCTTGAAACACGTCTAAAAGCATCGTTTCCTTgcataaaacaaacataaaaaaacatccaGGGCTGTCCTAACCCTGTGGATGACTGGAGGCTGGAATTAAAGCGTTGATGAAGATTGTCTGTTTTATAATGGGCCTGGTGACACCTGTAGCGACTAGTGGTCACATCAAATTACACATCTAACCTAAATTGTTTTAATGCAAAATGAAACATGGAAAGTCGACTCTGGAGGCAGCAGTCTGACAGATAGTCATCTGAACAATCCGTACAGCTGTAACCCAAATAAACTAGCACAATAAGATTGGATTTATTAACCCAAGAGTAGAAACCTGATGCATGATCGGATGTCTTTTAAGAAACAAATGCCACTAGTTGCCACTGCTTGGGATACATTAGCCATTATGGTGTTCTTTTACATCCTGTACCTGTACAAGCCAGTTAGGTAAATATGCTTTATATGTATTAATTGTTGAGAGTTTGATGAAAACATCAATACCACTCTTGGAAATGAGGGGAAAACGGCTAATAATAAAAATTcctgaaatgtaaaattattccTTTAATTTTTGGGGGTAATTCTGACTCCAACACCAACAgggagtatgtttacatgcacccaatattccactattattcagaatatgacaatattccgaatttgatacaggtcatgtaaacagcatattccggttggatattccgaataaggcctttttccgaatataatattttccgattaagacatgggggatattccggtattatttgggttttagaagcattctttggacatgtatttagcgcattcggaatatgatctcaatcagggtttttaccgcaatttacggcctcttgcctgtttaggGATTATGGTcggctctgtgcgttgctatggttgctgtacacaaaccaaccagccaacagtttgcaaggctgcagacccaaTAAGAAGGAGGAACGCAGCTACTtgtaaacattatcaaagacttggatatcaacaggtttttggatatgtgcacacatcgctacgacgaccttttcaagaagctggttgaaggaatgaaagagggacgctgtgttcgaaGGATACAGCAAGAAAACTTCATTTTTCTTCGGAAAAATcgtattttgcacggctacatgtaaacgggaatattagttaaatattcactttcattaaccatgtaaacagcttagttggAATATCGTCTTTATCGGAATAAGGgctaaaaaccggaatattatgtgcatgtaaacgtagtcagtgaaaaatcacaaagtgctacAATTGAATTAGATTTTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48384 lncRNA upstream 41862 5234383 ~ 5234591 (+) True G36105
TU48315 lncRNA upstream 221481 5054431 ~ 5054972 (+) True G36054
TU48312 lncRNA upstream 257817 5017652 ~ 5018636 (+) True G36051
TU48305 lncRNA upstream 336182 4937962 ~ 4940271 (+) True G36044
TU48293 lncRNA upstream 396059 4851254 ~ 4880394 (+) True G36035
TU48400 lncRNA downstream 159475 5438157 ~ 5440609 (+) True G36114
TU48455 lncRNA downstream 415711 5694393 ~ 5694946 (+) True G36145
TU48487 lncRNA downstream 742171 6020853 ~ 6021123 (+) True G36170
TU48492 lncRNA downstream 776562 6055244 ~ 6056226 (+) True G36175
TU48491 lncRNA downstream 828188 6106870 ~ 6107152 (+) False prok2
XM_039796922.1 mRNA upstream 232976 4956351 ~ 5043477 (+) False LOC120556975
XM_039798207.1 mRNA downstream 331328 5610010 ~ 5665053 (+) True cntn3b
XM_039798206.1 mRNA downstream 338073 5616755 ~ 5665053 (+) False cntn3b
XM_039798002.1 mRNA downstream 515050 5793732 ~ 5905163 (+) True pdzrn3b
XM_039798003.1 mRNA downstream 515050 5793732 ~ 5905163 (+) False pdzrn3b
XM_039798004.1 mRNA downstream 598782 5877464 ~ 5905163 (+) False pdzrn3b
XR_005638977.1 other upstream 342289 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 342289 4911700 ~ 4934164 (+) False cdk5rap1
TU48130 other upstream 690978 4556704 ~ 4585475 (+) False G35921
TU48469 other downstream 642242 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 756418 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 1356620 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1963527 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2949080 8227762 ~ 8228720 (+) True G36744

Expression Profile