RNA id: TCONS_00073658


Basic Information

Item Value
RNA id TCONS_00073658
length 2989
RNA type mRNA
GC content 0.49
exon number 15
gene id XLOC_037451
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 51147380 ~ 51217396 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAGTCAGTAGCAAAGCAGGGCGATCAGTGAACTTCTTAACAGAGCTAGTTCACATCGAAATGGATCCAAACATGAGCAGCGATCAAGACACCGAGACTCGACACATTCTGGACTGTTTCAGAGACAGACTCAAGCGGCTTATTCAGGTCGAGCCTCTGCTGGATCTGCTGGATTTCCTTGAACCGGACAAAAAAGAGCGAATAAAAGCCAAAGTGGCCTCGGAGGGGAATATTAATGCCGTTTCTTTGCTTATCAATGAGATTATGCGCGCAGAGCTCCAGCAGGGGTGGTCGAGGACTCTGGTGACCGCGCTGGAGACCGTCGGGTGCGGGCACGCCGCGCGGTATGTGCGCAACAGGCCGCCGGAGCCAGATGAAGAAGCCGAACACGACAGCTGTGTGCGGCTTATAGACCTGCTGCATCTCAGCCTGGTCAACATGAAGACCCGGGacgtgtgtgtgcagtgtgtgacTCTGGGGCTGCTAACGCAAGAGGACCAGGAGAATATTATGACAGCCACCGGGAACAACGGAAATATAAATGGTGCTCGTCTGCTCCTCAAAAGGCTGGTGAAAAACGAAGCTGGCTGGTTTTCTAAATTCCTTCAGGCTCTGGAGGACACGGAGCACCGTGACCTGATGCGCGAGCTGCGAGGAGAGCCGTGCGAGGGGGACGAGGGGATGTCTGTGGACTCGTCGGATGCTCAGGCTGAAGTGAAGGACACCGGTGCAGTCAGAAGAAACTCAATGTCTTCTCCTCCTCCGTCTTTCACCCCCAACAGCTCTCTTCAGTCAGAGGATCTGGACGACAGTGTGGACAGCAGCCTCCTGGGTGTGGATGCTGGAAATCAAGGGGTGGAGATGTATGAAGACGGtgaagaaaaggaggagaaagatCTCAaagaagatgaggatgatgattcATCAGCAAGTAAGAGGGAAATTAAACTGCGGGACTATCAGATGGAGGTGGCCAGACCTGCTCTGGAGGAGAAGAACATCATTGTCTGCCTGCCCACCGGATCCGGGAAGACCAGGGTCGCAGTGTTTATCACCAAAGAGCATTTGGAGAGGAAGCAGCGGATGGGGCAGAAGGGGAAAGTGGTCGTCCTGGTCAACAAGGTCCCGCTGGTTGAGCAGCATTACAAGGCCGAGTTCGGGAGGTTTTTAAAGCACCAATACTCAGTGGAGCGGGTCAGCGGTGCCTCACAGCTCAAAATCTCCTTCCCACAAATCATCGAGAAAAATGACATCATCATCTGCACGGCGCAGATTCTGGAAAACTCTTTAGCCAAAGCCAAAAACGGCGACGAGGATGGGATCGAATTATCACAGTTCACCCTGATGGTTATTGATGAGTGCCACCACACGAAGAAGGGCGGTGTGTATAACCACATCATGATTCGCTACCTGAAACAGAAGAATAGGAACCAGCTGCTGAAGAAGCAGGACAAAACTTTAGTTCCCATCCCTCAGATCCTGGGTCTGACTGCCTCACCTGGTGTGGGAGGAGCGGTGAGCCAGCAGATGGCGGAGGAGCATATtctccagATCTGCGCAAACTTGGATGCCTTCACAATCAAAACAAAGACTTTCGAAGAAGAAGAGGCCAAAACACCATTCAAGAGGATTGCGAAAGCAGAAGAGAGGAAAGAGGACCCATTTGGAGATGTGATCAAGAAGATCATGGATGAAATCCACACACATGCTGACCTGCAGCCCCTTTGTGAGCCCGGCACACAGAACTATGAACAGTGGGTCGTGCAGAAAGAGCAGAACGCTGCTAAAGAGGAGAATCAGAATGTTCGCGTGTGTGCCGAACATCTCCGCCAATACAATGAGGCTCTTCATCAGAGCAACACCATTCGAATGTCTGACGCTTTCCGGTTCCTGGACAAATATCACAATGAAGAGCTCAAGACCAAATCTAGCCCTGACGAGGAAGGCAACATTACAATCACGGACACAGAGAGATTCCTCTTCACTTTGTTCAAAGACAAAAAAGCGAAGCTGCAGGAGCTGATGGGAAAGCCGCAGTATGAAAATAATAATCTGGCCCAGCTGAAAACCATCATCCTGAAGGAATTCAGCACCAGAGAGAAGGCGAGAGAGTGTTAACGAATACAGAGAGAAAATGATGAGCAAAGCCATCGCTAAAGTCTGCAAAATGAACCGAGCTGACTACGAAAAGAAAaTCATGGAGTTTCAGATCCAGGCCATAATGGAGGAGAAAGTCAAGACCAAAAAGAAACAGCAGAAGGGAATGATGAAGGAGCCGCCGTCTAAAATCAGCCTGAGCTGCAGGCAgtgcagtgtgtttgtgtgctctggAGAAGACATCGAGATCATCGAGAAGATGCACCATGTCAACGTTACCAAACAGTTCAGAAAGCTGTTCATAGTCCGAGAGAATGCGTCACTACAGGAGCGACTCTTGGACTACGAGACCAACGGAGTCATTGCGTGCAAAAAATGTGGACAGCAATGGGGTTCAATGATGCTGTACAGAAGCACTGAATGTCCCTGCCTTCATATCAAGAACTTTGTGGTCACATACGGCTCCAAGAAGAAGACGTTCAGCAAATGGAGAGAGCTGTCCATAAGCTTCCCTGCATTTGACTACACCCAGCACGCCGATCTCCTTGTTGAGGATTCAGAGGATGAAGATATGGACACTAACTGAGAAAAAGGAGAGAAAGATATTCATACTCATCTGACACAAACATTAGACCAGATTTTTGAACAGCTTGCAACAACCCAAACACTCTTTCGTCTTCAACCAATTTAGCACCTGTGTTGTTAGTACAAATAATACACAACATCATCTCTGGTTCTGCTAGTTAGCATTCTAATTTGAACTGTTTACATTTCTTTAACAGTAAACGTGCTGCTTGCTAGAGCTGCATaatacttcaaaaatattgttataaGTTAGGAAAAAAGTACATCAAGAAGGATTGtctcagaataaagcctgacagtgAAGCAG

Function

GO:

id name namespace
GO:0045087 innate immune response biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0009615 response to virus biological_process
GO:0032728 positive regulation of interferon-beta production biological_process
GO:0005737 cytoplasm cellular_component
GO:0005515 protein binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0003725 double-stranded RNA binding molecular_function
GO:0003727 single-stranded RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05161 Hepatitis B
ko05171 Coronavirus disease - COVID-19
ko05164 Influenza A
ko05162 Measles
ko05168 Herpes simplex virus 1 infection
ko04054 Pattern recognition receptors

ZFIN:

id description
ZDB-GENE-081104-438 Enables protein heterodimerization activity. Acts upstream of or within regulation of transcription, DNA-templated. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human IFIH1 (interferon induced with helicase C domain 1).

Ensembl:

ensembl_id ENSDART00000188480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075221 lncRNA upstream 6643 51137336 ~ 51141121 (+) False XLOC_037450
TCONS_00075223 lncRNA upstream 6643 51137352 ~ 51141121 (+) False XLOC_037450
TCONS_00075222 lncRNA upstream 6643 51137352 ~ 51141121 (+) True XLOC_037450
TCONS_00074940 lncRNA upstream 14586 51109789 ~ 51133178 (+) True XLOC_037449
TCONS_00073656 lncRNA upstream 86803 51043455 ~ 51060961 (+) True XLOC_037448
TCONS_00075224 lncRNA downstream 548138 51765534 ~ 51775942 (+) True XLOC_037455
TCONS_00075225 lncRNA downstream 738629 51956025 ~ 51957617 (+) True XLOC_037458
TCONS_00075226 lncRNA downstream 745089 51962485 ~ 52006435 (+) True XLOC_037459
TCONS_00075227 lncRNA downstream 1169144 52386540 ~ 52402421 (+) False XLOC_037461
TCONS_00075228 lncRNA downstream 1410848 52628244 ~ 52629286 (+) True XLOC_037465
TCONS_00073653 mRNA upstream 392095 50600355 ~ 50755669 (+) False XLOC_037444
TCONS_00073652 mRNA upstream 395482 50599362 ~ 50752282 (+) False XLOC_037444
TCONS_00073654 mRNA upstream 396150 50749388 ~ 50751614 (+) True XLOC_037444
TCONS_00073651 mRNA upstream 807044 50316921 ~ 50340720 (+) True XLOC_037442
TCONS_00073650 mRNA upstream 942007 50175366 ~ 50205757 (+) True XLOC_037441
TCONS_00073660 mRNA downstream 7949 51225345 ~ 51261339 (+) True XLOC_037452
TCONS_00073661 mRNA downstream 47887 51265283 ~ 51271597 (+) True XLOC_037453
TCONS_00073662 mRNA downstream 438240 51655636 ~ 51755758 (+) True XLOC_037454
TCONS_00073663 mRNA downstream 567526 51784922 ~ 51804828 (+) True XLOC_037456
TCONS_00073664 mRNA downstream 665138 51882534 ~ 51884024 (+) True XLOC_037457
TCONS_00073655 other upstream 347291 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073648 other upstream 1057507 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073638 other upstream 1362327 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073602 other upstream 4716631 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 5326179 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073665 other downstream 864915 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 4030804 55248200 ~ 55248314 (+) True XLOC_037493
TCONS_00073716 other downstream 4699017 55916413 ~ 55916544 (+) True XLOC_037503

Expression Profile

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