RNA id: TU48400


Basic Information

Item Value
RNA id TU48400
length 2359
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G36114
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 5438157 ~ 5440609 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATCAAGAACATTAATCATCTTTCATTAGTGATGGCTGTGACCAAACAGGCAGTCAGACCATTACCAGGATTTAAGAAAGTAAAGCAATTTAATGACATCAAAAAACACCAATTAACATTCTTAACATGCAATGGCAGAATTTTTACAAAACATTGCAATTTTTCTGATCGTGGTGCTAATGTTAATTCTGACCAACATAATGATTTTGAACGGCAGTATATTGAAAGTAACAGAGTAAGACTTGTTAAGACTGATGTAGCAGTGACTACCGTCTATTGTATCTTAGCAGGGTAGGAAGATGTCAAAAATCATGCAACCAGATTACAGTATTCTGATTACAAACAACGTCTATAATCCATTACAGGTACTGTGCACTTGCTTCTTTAAAGGGGCAGTCCACCAGTTCATACATGAAAATCGGTTTACGGATTATTGAGAGCACTACTCAATCTACAAACACAGTTGTATAATGTTCAGTGGCTCTGGAGATGCTCTGTGAAGCAAAAAAGAACTGATGATGTCATAATGAAGTCACTGGGGTTATCTAATCTTGGACTTTGAGACTGCCAATTATCGATTACGActcatatttacgtttatagtTGAGGTGCCCTAAagtggccgtagtaattatgacaggaagtaaggtgatgaAGTATAAGAAATTCCACATAGAGGAAGCTGTGAGTTGTGTTCTGCGTCACATGCGTAAGTGAAGTAACGTAacatgattttaacccaaaccgcaatctttttctaaacataactaagCAGTTTTTGTGCGTAAACCTCGCCATACTGCGTCCGTTTCACAACATTAATGGCGCGTGTCGgtaacgttctctggtttagatcttagactgtatattaaagtctccacttcctcccactgtacaaaagtgaagccaaaatatcccggaTACGGAACGCTGCCATTTTGTAAGACTCTGCGCAGTAGTGATCAGGCGGTGGAGCCGCGGTACCGAAGTCCTGCCCTTACACCCGCCCGACCAATCACGAATAAATCACAATCATGACGTTTCACCCCGTTTGCAAAGCAACAAATgactaataaaaaccaaactgatCAGAAAGAGGAccacttgaacaaacatcagcgcgataagaactacctaaaatgacagaacCCATCTTTGGGAGAAATGTATTTGACGTTTGACGTGTACTTTCCTTGGCCCATATCCCATCCGCTAACATGGAGTGGGCGGGATTTATGACCTttatggggtggggggggggaatcaagatgttttggcttcacttacaCAGACTATGCATCAACCCCTTGTTTAGATATAAAGATGGAAAATGCTCCCGTGTGTGGGTTTTCCTGCTACCTCTCGGTTTAttaaaacgctcctgtgggtcgtatcaGACGGTAGAAATAAACAACCTGTATTGTTGTTTGGTTTGGAGGACCGGTTTGcatttttggagcttgacctAGGGACTGCTTCCATATTTTCCATTCCATTATTAGCACGGGGCTGTAACAGCACAGACCGAGGTCTGTAACTTCTCCTGTCCAACGCATCTGAATGCAACAAAAAAGACATAAGAGCTacgttttcttttcttctaacATCACAGGGAGATTCATTACTCTTTTATACTCACATTTAATGAATCAATTTCAAATATAACAGGTCAGTAATATTTgctccaattaaaaaaaaaacaatatcaacTTGATTTTCCCACTTATCTGTGGTCTGCTACAAGATGATATCACAGGCAAAGCTGCATATAATGATGTATAATGGAGAGTGGCATTTTCCTGACATTTGTACAAACAGTACTGCAGTTGAAgtactggagataaaaaaaaagaaaattcaagCCCTCTAAATTGTTTGtgtaataattatttaaaaaaaaaagacactccgcacatacaatatacactatatatacacagtatttaGTAATGGTCATTCTGTTGCAACCCGACAAAACAGAGCTTTATAATATGAGGGTGGCAGTGTGCAGTTGGAAATGACGCATTACATTTGACACAAAACTTGTGCTCGGTATGGATAATGTCTGTTTCCTCTTTCATTTGTTCCTCCCAGCAGGTTTTAATGAAAACGTTGTCTAGGCGAAGATGGATGGCGGTTTCGGCTCCTCACGCCGGGGTCTGAATAGTGGCTTTGATCTCAGCGGACACCCTCTTCTCCTTTCGCCCGGCGTACTCGCCGATAAAGGAGCCGTCCTCGTTGAACTGAACGTCCTCGTCCCCGTAGTCCACCAGGCTGTCCCCGCTGTCCCCGGCTTTGATCTCTCTGCTCAGCGAGTGTTGGCTGCCCTTCAGTGGCTTCTCGTCGTTGTCACTGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48385 lncRNA upstream 159475 5276453 ~ 5278682 (+) True G36106
TU48384 lncRNA upstream 203566 5234383 ~ 5234591 (+) True G36105
TU48315 lncRNA upstream 383185 5054431 ~ 5054972 (+) True G36054
TU48312 lncRNA upstream 419521 5017652 ~ 5018636 (+) True G36051
TU48305 lncRNA upstream 497886 4937962 ~ 4940271 (+) True G36044
TU48455 lncRNA downstream 253784 5694393 ~ 5694946 (+) True G36145
TU48487 lncRNA downstream 580244 6020853 ~ 6021123 (+) True G36170
TU48492 lncRNA downstream 614635 6055244 ~ 6056226 (+) True G36175
TU48491 lncRNA downstream 666261 6106870 ~ 6107152 (+) False prok2
TU48522 lncRNA downstream 671068 6111677 ~ 6114313 (+) True G36201
XM_039796922.1 mRNA upstream 394680 4956351 ~ 5043477 (+) False LOC120556975
XM_039798207.1 mRNA downstream 169401 5610010 ~ 5665053 (+) True cntn3b
XM_039798206.1 mRNA downstream 176146 5616755 ~ 5665053 (+) False cntn3b
XM_039798002.1 mRNA downstream 353123 5793732 ~ 5905163 (+) True pdzrn3b
XM_039798003.1 mRNA downstream 353123 5793732 ~ 5905163 (+) False pdzrn3b
XM_039798004.1 mRNA downstream 436855 5877464 ~ 5905163 (+) False pdzrn3b
XR_005638977.1 other upstream 503993 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 503993 4911700 ~ 4934164 (+) False cdk5rap1
TU48130 other upstream 852682 4556704 ~ 4585475 (+) False G35921
TU48469 other downstream 480315 5920924 ~ 5924400 (+) True G36156
TU48489 other downstream 594491 6035100 ~ 6052769 (+) False rybpb
TU48651 other downstream 1194693 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1801600 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2787153 8227762 ~ 8228720 (+) True G36744

Expression Profile