RNA id: XM_039798603.1


Basic Information

Item Value
RNA id XM_039798603.1
length 533
RNA type mRNA
GC content 0.53
exon number 4
gene id prok2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6104613 ~ 6107152 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGGGCTGGGTTTATAAACCTCCGCCAGATGAACACATGAGTTTGAAGGCCACTtgtctctgctgtctgtcaCGTATGCACATGCAGGAAGGTCTGTCAGCATCAGCATCCTTACTTTTCACCCTGGAGGGCACTGGAGCGCAAAGACAGCTCTTCATCATGAGGTCCTTCTTCCTACTGCTCTTCACCCTGTTGTTGGTGTCCCACGGATCTTCGGCAGTCATCACAGGGgcctgtgAGAAGGACTCTCAGTGTGGAGAAGGCATGTGCTGTGCAGTGAGCTTGTGGATCCGCAGCCTGCGTATGTGCACGCCCACGGGCCAGAAAGGAGACGACTGTCACCCTATGAGCCACAAGGTTCCTTTCAATGGGAAAAGACTCCACCACACTTGCCCCTGCCTGCCCAACCTGTTGTGTATCACCACAGAGGAGGGGAGATCCAAATGTCACCCACCATACAGCTATTCCAATTACTACCTCTGAGACACTTACAGTTACACTGTTTGCCACTAGCACTGTTCTGCCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48492 lncRNA upstream 48387 6055244 ~ 6056226 (+) True G36175
TU48487 lncRNA upstream 83490 6020853 ~ 6021123 (+) True G36170
TU48455 lncRNA upstream 409667 5694393 ~ 5694946 (+) True G36145
TU48400 lncRNA upstream 664004 5438157 ~ 5440609 (+) True G36114
TU48385 lncRNA upstream 825931 5276453 ~ 5278682 (+) True G36106
TU48522 lncRNA downstream 4531 6111677 ~ 6114313 (+) True G36201
TU48543 lncRNA downstream 92637 6199783 ~ 6306143 (+) False foxp1b
TU48563 lncRNA downstream 322361 6429507 ~ 6433109 (+) True G36231
TU48637 lncRNA downstream 436321 6543467 ~ 6544074 (+) True G36288
TU48648 lncRNA downstream 467000 6574146 ~ 6574347 (+) True G36299
XM_039797791.1 mRNA upstream 49397 6035072 ~ 6055216 (+) True rybpb
XM_039797502.1 mRNA upstream 90659 5957271 ~ 6013954 (+) True shq1
XM_039798765.1 mRNA downstream 11486 6118632 ~ 6132639 (+) True LOC120557997
XM_039797612.1 mRNA downstream 32317 6139463 ~ 6304383 (+) True foxp1b
XM_039796631.1 mRNA downstream 307820 6414966 ~ 6426594 (+) True eevs
XM_039796834.1 mRNA downstream 359670 6466816 ~ 6521161 (+) False LOC120556937
XM_039796835.1 mRNA downstream 381321 6488467 ~ 6521161 (+) False LOC120556937
TU48489 other upstream 51844 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 180213 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1170449 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1170449 4911700 ~ 4934164 (+) False cdk5rap1
TU48133 other upstream 1519138 4556704 ~ 4585475 (+) False G35921
TU48651 other downstream 528156 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1135063 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2120616 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2509852 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 2534884 8642030 ~ 8642101 (+) True trnae-cuc_5

Expression Profile