RNA id: TU48522


Basic Information

Item Value
RNA id TU48522
length 2637
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G36201
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6111677 ~ 6114313 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaatacaaacaatgcaAACATCCTTTCCAAAGCACCAAATTGTTAACATTTCCATATCGGTAGAAAAAGAATGCTATCTGTACAGTACTTTATATCCACACGGGAATGCAAATGAACCCATTTCTCAACACAGCTGACCTATGAAGAAGAATAATAACTTGCAAAATATCTTTAAACAAAACACCTTTTTTGACACAAAGAATCCCAGTGGGTTATGACATATGCAACATGTCtggttaaaaaagcagaacGAACGAGGGAGAATGgctttacattatttacacGTGTGACACTGtcctaattaaaaaatatactgagATCTGTTTCTCATTTGTGGTATCCAAATGACTAGAACCCAATGTCACAGATGCTAGAAACGGACTCTAATCAGCTGATAAAATAGTTCTGTTGTGTGTCAGTCATCAGGTCTGCAAAAAGGCAAACAACCTCAAAAGGGTGTGACGGGATATAATTTCAAAATATAGAAACAGATAGCCAAAGTGACATTCATGTACAACATTGTAGTGGAGCAACAGAACATAACATGACCCATAACTGTCATAGAGGCTACTCTATATTTGGAATTCACCTAGAgggataaataaaaaaggtagcAAAGGTGATTGTTTTGTAAAAGCATCACATTCTGCTTCTATCCCTTAATATAGCTGTAATTAGTCTGATTCGGATCAGCATAAAATAGTATGAATTTAAAtcatattcaacttttttttttgtctcagaaTAAAATAGCAGGTACAAGCTTTGccacaaataaaaatgtggGTAAATTGAACTGCAGTGGGTTCACCCTCCACAACAGCCTGTGTGCTTGTAGTCCTACAAACACATTTTGGGGACCAGTCTGTACATTCTGAAACAAGATGTAATGTGTCTTTGGCAGTATTTTAGTGCCTGTATACTGTTCAGATGACACAGTATGGCTCCATGGGTGTCTGTGTTCCCAGGCAGCAGGGGAAACAGGCTCTGAGGCGCACCCGGAGCTCCTTGTTGAACAGGAAGCTGATGATGGGGTTCGCTCCCGCCTGGGCGAAGCTCATCCAAACCGCAGCGCTCAGGTAGAGCTGCGGGACCGGGGCTCCCCGCACAAATATTCTCAGGTAGCAGGCGCTTATATAAGGAGCCCACAGAATGAGGAAGGTCAGTGTGATCATGTAGTACATCTTCCCTATCCGTTTCTCCATCTTAAACTCGTCCAGCACCAGCAGCCTCCTGTTGCCGGGGTGCGAAGCTTGCCTGATGCCCACCAGCGTCGGCGGAGTGGGTCCGCGGCCGAAGCCTGTGATCCAGTTGGCGGCGGCCTGCCCGGTGGCCCCGGGCCCGTGGAAGGTCCAGTTCTGGCTGATGGCAGGGACCAGTTGAGCCGGCTTCATCTTGCGGTGATCGTAGACGAAGCACAGCATCTTGATGTAAACCACGTGGGTCATCCCCACGATGACGGCCAGCATCAGCATGAAGCCCAGGGTGTCGTTCGCCTTCACGTAGCGGTGCTCGAACGTGCACTGCTCCTCCTCACGGACGAATTTGTAGGTGCCCACGTCGAAAACCGGAGGGAAAGCCATGGCCACGGAGAGAGTCCACACCATGCAGATCACCGCCACGCACGTACACAGGTTCATCCTCTTGTAGTAGAACCTGTGGTGGGCGATCGCCATGTACCGGGTGACGCTGACGCAGAAGAGCAGGAAGGCGACGTGGAAGCAGAAGAGCACCGACACGAAGGCGACGATCTTGCAGCTGAGCGCGCTGTACGGCCAGGCGGAGCCGCCGCCGATCGATGCCATCACGAAGGGGAAGCAGACGGCCGAGCGGAGCACGTCTGCCAGGCACAGGTCCAGGAGGAAATAATAAGGAGCCTTGTGCAGCGAGCTgtccttcagcagcagcagcgacagCGACGCGTTGCCCAGCAGGCTGATGCCCATGATCAGACCCAGGGAGGCCACCTTGACCGCAGAGGCCGTGGACGCATAGCTCTGTAAGGACGGGCTGCTCTCCCCAAACTCACTTGTGTTTGCCATCTATGCAGCCGAGGTAGCGCGTATTCCCACATCAATTCATTGACGAGCGGTGTGGTATATAGCCCGTCCTGCCAAGGCTGACATTAACACAAAACCAACACGATCCGCCAGCACCccctttaaaagaaataaacactcGGGATTAAATTCCACTCAGAAGCATCCGTTCAACATGGGTTCGCACCCACCCCGATGTGCTGTGATCCCCATCAATAACAAACATctactatttctttttcttcttcttgtccttCATTTCACAAGTGTCCGGTACAAAAACACAGTCCTGTCTGTTGCTCCAGTCTCTGCTGAATAGAGGCAGCCTGGTTTAGCTTTATACACCATCTCGGAAAGCATCCCTTCAGCAGACAATTGGGGCtcagaaaacacatttcaattTCCACCGATGGCGGAGGTGTCCCTTTCGTCTTCTTGAGGAAGAAGCATGGCGCAAATACGCATCCACAGTCTCGTCAACGGCTGCTAAAATCTCACTTATAGCCGACAAAAAGCAAACATGCCGAGTGGAGATCGGAAGCTTGCAGAGGTGGGAGCGGTGGATCTCACACAGCAGCGTCTAGCGACGCACGTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48491 lncRNA upstream 4525 6106870 ~ 6107152 (+) False prok2
TU48492 lncRNA upstream 55451 6055244 ~ 6056226 (+) True G36175
TU48487 lncRNA upstream 90554 6020853 ~ 6021123 (+) True G36170
TU48455 lncRNA upstream 416731 5694393 ~ 5694946 (+) True G36145
TU48400 lncRNA upstream 671068 5438157 ~ 5440609 (+) True G36114
TU48543 lncRNA downstream 85470 6199783 ~ 6306143 (+) False foxp1b
TU48563 lncRNA downstream 315194 6429507 ~ 6433109 (+) True G36231
TU48637 lncRNA downstream 429154 6543467 ~ 6544074 (+) True G36288
TU48648 lncRNA downstream 459833 6574146 ~ 6574347 (+) True G36299
XR_005638905.1 lncRNA downstream 464667 6578980 ~ 6581148 (+) False LOC120556885
XM_039798603.1 mRNA upstream 4531 6104613 ~ 6107146 (+) True prok2
XM_039797791.1 mRNA upstream 56461 6035072 ~ 6055216 (+) True rybpb
XM_039797501.1 mRNA upstream 97723 5958592 ~ 6013954 (+) False shq1
XM_039798765.1 mRNA downstream 4319 6118632 ~ 6132639 (+) True LOC120557997
XM_039797612.1 mRNA downstream 25150 6139463 ~ 6304383 (+) True foxp1b
XM_039796631.1 mRNA downstream 300653 6414966 ~ 6426594 (+) True eevs
XM_039796834.1 mRNA downstream 352503 6466816 ~ 6521161 (+) False LOC120556937
XM_039796835.1 mRNA downstream 374154 6488467 ~ 6521161 (+) False LOC120556937
TU48489 other upstream 58908 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 187277 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1177513 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1177513 4911700 ~ 4934164 (+) False cdk5rap1
TU48129 other upstream 1526202 4584239 ~ 4585475 (+) False G35921
TU48651 other downstream 520989 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 1127896 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 2113449 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2502685 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 2527717 8642030 ~ 8642101 (+) True trnae-cuc_5

Expression Profile