RNA id: TU48648


Basic Information

Item Value
RNA id TU48648
length 202
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G36299
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6574146 ~ 6574347 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gttagaaatcactacacacacaggcctgaaatacacacacacatgctcaggatgTTCATGCACAAAtgaagagatgtcagagtgagtgggctgccagtgctggaccagcgccctgagcggttggggggggtacggtgccttgctcaagagcacctggcagtgcccaggaggtgaacaggcatctctccagctaccaatccac

Function

GO: NA

KEGG:

id description
ko04927 Cortisol synthesis and secretion

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48637 lncRNA upstream 30072 6543467 ~ 6544074 (+) True G36288
TU48563 lncRNA upstream 141037 6429507 ~ 6433109 (+) True G36231
TU48543 lncRNA upstream 268003 6199783 ~ 6306143 (+) False foxp1b
TU48522 lncRNA upstream 459833 6111677 ~ 6114313 (+) True G36201
TU48491 lncRNA upstream 466994 6106870 ~ 6107152 (+) False prok2
XR_005638905.1 lncRNA downstream 4633 6578980 ~ 6581148 (+) False LOC120556885
TU48649 lncRNA downstream 4633 6578980 ~ 6581303 (+) True LOC120556885
TU48723 lncRNA downstream 198389 6772736 ~ 6773170 (+) True G36353
TU48740 lncRNA downstream 373732 6948079 ~ 6951049 (+) True G36368
TU48741 lncRNA downstream 379105 6953452 ~ 6953907 (+) True G36369
XM_039796839.1 mRNA upstream 32715 6537541 ~ 6541431 (+) True si:dkey-178o16.4
XM_039796838.1 mRNA upstream 36722 6529451 ~ 6537424 (+) False trnt1
XM_039796837.1 mRNA upstream 36722 6529460 ~ 6537424 (+) True trnt1
XM_039796832.1 mRNA upstream 52985 6488473 ~ 6521161 (+) False LOC120556937
XM_039799097.1 mRNA downstream 31023 6605370 ~ 6619215 (+) True lrrn1
XM_039796368.1 mRNA downstream 60933 6635280 ~ 6638523 (+) True setmar
XM_039796658.1 mRNA downstream 73968 6648315 ~ 6753630 (+) True itpr1b
XM_039796664.1 mRNA downstream 73968 6648315 ~ 6753630 (+) False itpr1b
XM_039796667.1 mRNA downstream 73968 6648315 ~ 6753630 (+) False itpr1b
TU48489 other upstream 521377 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 649746 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 1639982 4911700 ~ 4934164 (+) True cdk5rap1
XR_005638978.1 other upstream 1639982 4911700 ~ 4934164 (+) False cdk5rap1
TU48129 other upstream 1988671 4584239 ~ 4585475 (+) False G35921
TU48651 other downstream 60955 6635302 ~ 6638387 (+) False setmar
TU48863 other downstream 667862 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1653415 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 2042651 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 2067683 8642030 ~ 8642101 (+) True trnae-cuc_5

Expression Profile