RNA id: TU48740


Basic Information

Item Value
RNA id TU48740
length 2971
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G36368
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6948079 ~ 6951049 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGtgaattataatttttattACCATCAAAGTCATCAACTCAATCAAGGAGTACAGTACAGAGCTCACAAATGCAAGACAGGACCTACATGTGACCACTGGTCCTGGCAAACATCACATCTACAAATATGCCTGTAAGTGCATGGTAAAATGAACAGACATGGAATACTAAATACAGTAAGAAATGTATTGGGGGAAAAAGCTTGCTTTAAACTGTGTAACAGTGTTCAAACAGTATTTATTTGCCATCTAAACAAAGAGAACGGACTACATGAAATAATCAATTCACATAAAAATCTCTGATATTCTTCTTTAAGCCTCTCGTTAAAATCTAAATATTTATCTTAAACAATGTAAGAAATGATATAGTGGTATAATCATAATGATTAGTGTGTCTACCCATCTACCTTAGCACAAATTAAAAGGagatacagtacatgtataaataaaaagacTGCAAAAACAAAGTCAAACTTGAGATTCTACGGATTATAAAGGTGATACATTTTCTCCAgagccccctttttttttaaatctgaaatGCACATTTTCTTATAAATTCACAGGTGTTCACACTTAACAACAGATTGGGTCGAGTCGGACAAAGTGGCTGTGAACGAGCCATAACATATTATACTCTAATTATATCATCTAACAATAGTATTGACAATGTGGCTGCTGTTTTAATGAAAACCCATAGTTCTGTTTGGTTAGCCCATGGaaatcccccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactttatctgACTGCAGCCATGTGTTACTTAAGTGGCCCTGATGGGCTTGACAGCTGGCAAGGACTATAGACTTCCACTTACAGGTACATCGACTGTATCGAAAGGACACCAGGAATCACAGTTTCTGCAGCCGTTCAAATATTGCTCAATTTCCTCTAGAGTGATTACAGAGAACTTTTTCTGTAGCTCATTATTAATACTCGAGGGGACCAGTGACAAGAAAGGAAAGATTGTTATTACTGTTTATCAAGTATAAGGAGAAACATCTATGGAATCAACACATGACTGAAAgagtcaaaaaaacaacaacaaaaagaaatatgGCAATAACAAAATccaaataaatacacaataaGTTCAGAAATGTCAAACATATGcttcatataatatatatatatgtatataggtcaacaaagctgagttggtGAAGGTGACCCTAGTTACCACAAAGTCAAAACGATTAATCTCTCCCTAAAACGCCGCATGTGGTCAGTTAatgcacattttgttttacagttACAACCAAATAATAAGACATATGTGACATTTTGAGTCAATAACCGAAGACGAAGGACATGATTAAATCAAAGTAGATACAAGTAGACCAAGAAAAAAACAGTTATTGTCACGTGATGAATAAATCATGTCATGGagtttctaaaaatgaaaagctACAAATTAATTTGGATGCATAGAACTGCTATGTAATGAAGactgttttttagttttttttcatatgACTTACATTGACAGCAGGGGTGCTAAATGAACAGTGGTAATAGACAGCATAATGTATAgtgcttttgaaaaaaaacattagcctCGGCATGGCTTGTGGCAAGAGACGAGGGTGCTGTTTACTGCATTAAGATGAAGTTTGGCAGTAGCACATCCTTATCCACCAAGTGGCTGTAAATGTAAAACGAACAgcaaaaagtgagaacgcaTGCTGTTTTGGCTACTTCTACAAAGGTCTCTATATACAGAATCTTTACACTTACAGCTATTAGGTTCTTTCCTGAGCAGGAAGTAAGCAAAGGAacatagtgtttgtgtgtgtgcttatgtgtgaAGCTGCCTACTTCAAAATACAGTACTGGGCATAATAACTCCCAGTCACCAATCTCAGCATTGTTTAACGTACAATAACTGGTTAGTGTAGACTTGAACAAATAAGAAAGATAAGCATATTTTCCCTGTGACAGGAATATGTGATCTTCTTCATGTGTGAGGACCAGCACTTACTGAGTATCACGGTACAAGGTCAACATTTCAGAAGCAAAACTTTCCACTGATTCTAAGAACAAATACTGTAATTGCAAGACTGGCAGAGGGAAGTTTCCCAAGTTGGCTCATTAAAAAGGAATCAAAGCCGTTTTCAGCACAATTATGTCTTCCTATATTCTCTTATCGCTAAGAGAACAATAAGAAAGAAGACTTTAGCTGCAAGCCACAGCTCGACAGTAAATCTGTTTTTTGCCCCTTAAACTCAAATGTGCGGAGAAAGATGGTTTATATAACCTGACATAAAACACCGGAGGGTCAGTGAAAAAAGACACAATAAATGTAGAAAGAAAGCCAATGCAGCGCAGCACTCGGGAAAGGTAGCACACAGCCTCCATGAGATGATACTAATGCTGCAAGTGAGAGAGAAGCAGAGTCTGTGTCACCATGCTAGCAGGTAATGTACAGTGTGCAGGAGTTGGTGGGGACTGCAGAGGTCACGCAggaagggggggtgggggggtctaACCCTGCTCGTCCCCGGCATCAGTGGCTGCGTGAAGAGCAGCCGAAGCTTCTCCATTACAACGCGATGTGGGCTCGGCCTCCTGCGGCGCTGGGCTCGGTTCTTGTGGCGCCTCGGCTGAGGCTGCCACCCCGGCTGAGGCTGCCACCCCGGCTGTAGCCACCCCGGCTGTAGCCTCTGGCGCCGGTTGACTTATCTCCGCTCCAGCAGGGAGCTCTGTGACGGCAGCGGGCGCTCCCTCAGGTGTTGTGTCAGATGAGGGTGCAGTGGGGTCGGTGGCAGCCTGGGGAGCCGCGGCGTCTGCTGGGGCACCGGCTGCAGGGCTGGTTGCCCTCGAGTCACTCTGCTCGGGGGCTCGCAGTCTCTTCATGATGGTGGTGACTCGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48723 lncRNA upstream 174909 6772736 ~ 6773170 (+) True G36353
TU48649 lncRNA upstream 366776 6578980 ~ 6581303 (+) True LOC120556885
XR_005638905.1 lncRNA upstream 366931 6578980 ~ 6581148 (+) False LOC120556885
TU48648 lncRNA upstream 373732 6574146 ~ 6574347 (+) True G36299
TU48637 lncRNA upstream 404005 6543467 ~ 6544074 (+) True G36288
TU48741 lncRNA downstream 2403 6953452 ~ 6953907 (+) True G36369
TU48742 lncRNA downstream 4484 6955533 ~ 6955855 (+) True G36370
TU48783 lncRNA downstream 163400 7114449 ~ 7117220 (+) True G36408
TU48784 lncRNA downstream 168847 7119896 ~ 7121438 (+) True G36409
TU48786 lncRNA downstream 172251 7123300 ~ 7123519 (+) True G36411
XM_039798613.1 mRNA upstream 6467 6882145 ~ 6941612 (+) False sema3fb
XM_039798612.1 mRNA upstream 6467 6882146 ~ 6941612 (+) True sema3fb
XM_039798614.1 mRNA upstream 6467 6882146 ~ 6941612 (+) False sema3fb
XM_039798615.1 mRNA upstream 6467 6882146 ~ 6941612 (+) False sema3fb
XM_039798616.1 mRNA upstream 6467 6905953 ~ 6941612 (+) False sema3fb
XM_039797831.1 mRNA downstream 131216 7082265 ~ 7090752 (+) False LOC120557474
XM_039797830.1 mRNA downstream 131216 7082265 ~ 7089109 (+) True LOC120557474
XM_039797955.1 mRNA downstream 232150 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797957.1 mRNA downstream 232150 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797595.1 mRNA downstream 337858 7288907 ~ 7306343 (+) True hcfc1a
TU48651 other upstream 309692 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 895310 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1023679 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 2013915 4911700 ~ 4934164 (+) True cdk5rap1
TU48863 other downstream 291160 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1276713 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1665949 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1690981 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1759960 8711009 ~ 8711080 (+) True trnae-cuc_6

Expression Profile