RNA id: TU48783


Basic Information

Item Value
RNA id TU48783
length 1591
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G36408
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7114449 ~ 7117220 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCCGGTCATGAATGTGTTGCTGCTCTTTTAAGAGCTGAATACTGTTTATTGAAAGCACACCTGAGGACGTGTGGACTGGGTCAGAGTGTCCAGCATCCGCTCCACAATGACATCATGCCAGATCAGCGCCAATCCTCCATGATACTGCACAGCAGCAGGAATCACCCATCTGTACAAAGCATACAAAAGAGCTGCTCCACCGGTGCAACTGTAAAGAACAGTCAGCCACTTACATGTGTGGTCAGGCGGCACTCCCTGTCAACTTCTCACCTCCTCTCGCTGCTAGAGGAAAATCTATGAGTTTTCTAGCAGGCAGACACATGCCTGCATTTATATGAGACTAACTCCTCCCTCCTGTTCCTTCCATCCCCCTCTCAGAGCTTAGCTGAATGTGAGCATGCAATGCAAGGAATGGACAACAGACCAAATCTCCACACAGCCacccacagccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgggttaATCCCTGCTTGGCATTTAATGATTTCTTTGGTTTCCCTTTGAGTGCTGTTGCAAATACTAATTCACGATGTCAgatgtttaaaaatgacataaaacacGTAGTTTTGGCATTGTATACGATGCTGTTGTATACATGTATAAGTTCCATTAGGATAACATTTCCACCCTTTTCACCTAAAATGTGGTTACTATCACatactgcagtttttttttttataatacaaCATATAGTCATTAGAGTACTGCTTCAAGTTGACATTTCTGAGACACTGTCTGAATAAATTCATCTCACACTTCAGACTGTTCAGGTTCACCATTACATTTTCAGTACTTAAACTTACAAATAACTACTGGAGAATAAAAGTAATCTTATGTCAGTTTATTAAAATTCAGGAACTTTATGATCATGTATCAAGGCAGTTTTTCAGTAAGACAATACTTCTCTTTGGTCATTGCTATGCCTGAATTAGATGTGACTgccattaaaacacatttaaagacCAAGCAACCCAACTGGGTAAAGGCTGTTATTTAGGCTAATAATGGTCTATGAAAGATGTGCTTATTGATGCCAGCATCAGACTACTGCTGTATATCCCACAGCTGTCCAATTCCCGTGTCCAGTGCAATGTGTACCAGCCTGTTCCTGAACAGAGAGCTAGTCCACTGGGCTATGAATAAGACAGAACTGGTACATCTAGGAGGTGAGCCAGGGGTGTTGCAGACACTGGGCAGCTGTGGCTCTTTCCTCTGGCACTAACTCCAACATGGTCAGGAGGAATGAGCTGAACTGCACGGCTTCCTCCTGCCGCCACTCATACTTATCCAGCAGGATCTCAAACAAGCTCCATGGCTTCAGCTTTGAGATGTGTCGCAGTTGTCCTGCACAGGGTATGAAGTAGACTGATGGATATCAGATGCAGGTCATTTGGCAGTATAATGAACAAATGAGCATTTCTAAATTACTGTATTTGTAATAATTTAGTGTATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48742 lncRNA upstream 158594 6955533 ~ 6955855 (+) True G36370
TU48741 lncRNA upstream 160542 6953452 ~ 6953907 (+) True G36369
TU48740 lncRNA upstream 163400 6948079 ~ 6951049 (+) True G36368
TU48723 lncRNA upstream 341279 6772736 ~ 6773170 (+) True G36353
TU48649 lncRNA upstream 533146 6578980 ~ 6581303 (+) True LOC120556885
TU48784 lncRNA downstream 2676 7119896 ~ 7121438 (+) True G36409
TU48786 lncRNA downstream 6080 7123300 ~ 7123519 (+) True G36411
TU48787 lncRNA downstream 7722 7124942 ~ 7125628 (+) True G36412
TU48801 lncRNA downstream 28897 7146117 ~ 7147050 (+) True G36424
TU48803 lncRNA downstream 30771 7147991 ~ 7148691 (+) True G36426
XM_039797831.1 mRNA upstream 23697 7082265 ~ 7090752 (+) False LOC120557474
XM_039797830.1 mRNA upstream 25340 7082265 ~ 7089109 (+) True LOC120557474
XM_039798613.1 mRNA upstream 172837 6882145 ~ 6941612 (+) False sema3fb
XM_039797955.1 mRNA downstream 65979 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797957.1 mRNA downstream 65979 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797595.1 mRNA downstream 171687 7288907 ~ 7306343 (+) True hcfc1a
XM_039797596.1 mRNA downstream 171687 7288907 ~ 7306343 (+) False hcfc1a
XM_039797600.1 mRNA downstream 195514 7312734 ~ 7317082 (+) True gata1a
TU48651 other upstream 476062 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1061680 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1190049 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 2180285 4911700 ~ 4934164 (+) True cdk5rap1
TU48863 other downstream 124989 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1110542 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1499778 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1524810 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1593789 8711009 ~ 8711080 (+) True trnae-cuc_6

Expression Profile