RNA id: TCONS_00073662


Basic Information

Item Value
RNA id TCONS_00073662
length 3303
RNA type mRNA
GC content 0.43
exon number 6
gene id XLOC_037454
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 51655636 ~ 51755758 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgtaattaaaAAAGTTTTAGGGAAACTTGTGTTCATTTGTTCTGAAAAtaatttcaatgcaaaaaaaaaaactttataggtCCTGAAAGGGTTgcattttgtgctttaaaaaagtcTTTCCCTTCTTTAAGGGGTTAACTGTGACCTGAACATGTTTTGGTGAGATTTACTCCTACTACACCCATAGAAGAGAGAGTCAGTTTACTGTAGCTCTTCCTGTTGTTAGATAACAGCCACACATGCATCTTTTTAGCACACATCTATATCACTGGCATTGATGTTTACCCTCTTTACACACAGTTTTTATCTCTTcactttaaacacattttaaatctcACCATATAGCACATATGAAATTGTAAAACCACAAAAACCTGATGGCCTCACTCAGGAATGTGAAGTATTTGAGCCAAAGGAAACCAACAGCTGTCAACGGGGGGTTGACGAAACGTCAAAAACAATTACTCCAAAACTGCAGTGTTTTATAAAGCACAAACCGCGTGTAAATTCATGCATGTTTGCGCAACATGCATTATTCATTATCATATGGGCATAGAGTCAGTTTATGTTTAAGTGTTGTTTATACGCGCTCCCGACCCCCCTCTGAAAGGAGCGCAGTGGTTTCTTCCATAGTGGGAGGAGTAGTTTTGTGGAGAAGTCACCGCAGATCAATGAACTGAGCGGAACAGACGGGCTGGGCAAGCCGACTATATCTGTGGGATTTGTGCTGCTTtcctttaatattatattattatttggcACTCGTTACTATTCTGTCTGAAACAAGCCTCAAAGAGAGACTCTTAATGACAGCCTTGGTCCGTCATTGTGGTTTGTAGAGCCACACATACAACTTTGTCCTCCTGGATACACAAGATAACACACGACAGAAACATTTACTACTAAATAACACACTCGTTTGTGGATTTTGCGATTATTCAGGATGATTTTTGCCAATTCTGGACACACCTTAAGGACGTCGCATAATCGTAAGCAGCCACCTGTTGGCCCCGCCTCCCATCCGATGGCTCCGCCCAGTCCTGGAACCAACAGCAGCACTAatcacagcagcagcagcagcagcacagccGGCTGGGAGCAGCTCAGTAAAACCAACCTGTACATCCGCGGGTTACTGCCATCCACCACTGACCATGACCTGGTCAAACTCTGCCAGCCGTATGGAAAAATTGTATCAACCAAGGCCATCTTAGACAAAACCACAAACAAATGCAAAGGTTACGGTTTCGTGGATTTCGACAGTCCTGCAGCGGCTCAAAAAGCAGTCAGTGCTCTGAAGACCAGCGGCGTTCAGGCCCAGATGGccaagCAACAAGAGCAGGACCCGACTAACCTGTACATCTCTAACCTGCCGTTAACCATGGATGAGCAGGAGTTGGAGGCCATGCTGAAGCCCTTCGGTCAGGTCGTCTCCACACGAATACTCCGAGACACCAACGGGGCCAGTCGAGGGGTCGGATTCGCAAGGATGGAGTCAACAGAGAAATGTGAAGCCGTCATCTCTCACTTCAATGGGAAGTTCCTCAAAACACCAGCTGGAGTTATGGGTAAGTTCATGTCTGAGTGAACTTTAATAATCATCTACTTTAATAGAATCGTTTGCAAAGTctttgtgtttccatccaaaattgGGCTCCAAACTTATGAGACTGACTATTAGGGCTGCAAAATTTACATCTGATATagctacactcaccggccactttattaagtacaccttatggtatcaggttggacccacttttgccttcagaactgccttaatccttcatagcatcggttcaacaaggtactggagatattcctctgagattttgctccatattgacttgatagcaacacacagttgctgcagatttgtcggctgcacatccatgtctCCTGTtgcaccacatctcaaaggtgcgtgttatcctgctggaagtagacatcagaagatgagtacactgtggtcataaacggatggacatggtcagcaacaatactcaggtaggctgtggcgttgacatgatgctcaattggtactaatggacccaaagtgtgccaagaaaatctccccacaccattacaccaccaccaccaacctgaaccgttgatacaagtcAGGATGGATCCAAGCTTTCATGCTGTTAAAATATTTACCCTACCatttgaatgttgcagcagaaatggagactcatcagaccagacaacgtttccccaatcttttattgtccatttttggtgagcctgtgtgaattgtagcctcagtttcctgttcttaccaACAACCaggccacgttcaaagtcacttaaatcccctttcttccccattctgatgctcggtttgaactgcagcagatcgtcttgaccatgtctacatgcctaaatgcattgagttgctgccatgtaattggctgattagaaatgtgttactagctgttggacaggtgtacctaataaagtggccggtgagtgtaaacatCAGTTATGTTGCTTAGGTAAGATCAAAAAGTCTCCAGAACATCCtgagatgtgactattgtggtTGCTCACATTTGCAGTATTGTAAGATGCAGGTCTCTGCAcagattgtgattggccgagggAATACATGTCATCACAGGAGTGATTTGATTAGCAGTCGTGTCAGCCTATAGTGTTCCGAATGTAGGCGGTACCTAAATGTGAAGGTGACAGGGAGAAAAAGAGAGGTAGAAAGAGCATACTCACACAAACAGCAGTGTACGCTTCTTAACaagtataaaataaagaaatgtagTCTTTAAAATACAAAGACCAACAATACCAAATGGAGCAGTGCCGTTTTAAATAGTGTGTACTTTTAGTATAAACACTGTAAATGGTGACAGAAGTGTTCATTTGGGGTGAACCACTCAGTGAATGTGTGCTTCAACTCAGTTTGTGTGCATAAAAAGCTCTGCTGCTGTGTTAaagcccattcattcattcattcattcattcattcattcattcattcattcattcattcatgtcttCTCTGGTAATGATTCTCCTCATATGGGCTGTAAATGGAAACAGGCTTTCGGGCATGTGGCGCAGCCGTTCAGCCGTACTAAACAGCTTTCGCATGAATGTAGATTCAGACTTGCTGGATGAAATGCTGACTGAACTCATGCAAAGCTGGAGTGTCTGATAGATGTAATGCAGCAGTGAGGGCTGTTCAGTCATTcatgaatttattcatttattctttttattgCAGTACAGTTCACACTGAAACAAAATAAGATGCcgtttatatttgtgtttttttatcg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000169908

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075221 lncRNA upstream 514515 51137336 ~ 51141121 (+) False XLOC_037450
TCONS_00075223 lncRNA upstream 514515 51137352 ~ 51141121 (+) False XLOC_037450
TCONS_00075222 lncRNA upstream 514515 51137352 ~ 51141121 (+) True XLOC_037450
TCONS_00074940 lncRNA upstream 522458 51109789 ~ 51133178 (+) True XLOC_037449
TCONS_00073656 lncRNA upstream 594675 51043455 ~ 51060961 (+) True XLOC_037448
TCONS_00075224 lncRNA downstream 9776 51765534 ~ 51775942 (+) True XLOC_037455
TCONS_00075225 lncRNA downstream 200267 51956025 ~ 51957617 (+) True XLOC_037458
TCONS_00075226 lncRNA downstream 206727 51962485 ~ 52006435 (+) True XLOC_037459
TCONS_00075227 lncRNA downstream 630782 52386540 ~ 52402421 (+) False XLOC_037461
TCONS_00075228 lncRNA downstream 872486 52628244 ~ 52629286 (+) True XLOC_037465
TCONS_00073661 mRNA upstream 384039 51265283 ~ 51271597 (+) True XLOC_037453
TCONS_00073660 mRNA upstream 394297 51225345 ~ 51261339 (+) True XLOC_037452
TCONS_00073658 mRNA upstream 438240 51147764 ~ 51217396 (+) False XLOC_037451
TCONS_00073659 mRNA upstream 438508 51180508 ~ 51217128 (+) True XLOC_037451
TCONS_00073657 mRNA upstream 438546 51147380 ~ 51217090 (+) False XLOC_037451
TCONS_00073663 mRNA downstream 29164 51784922 ~ 51804828 (+) True XLOC_037456
TCONS_00073664 mRNA downstream 126776 51882534 ~ 51884024 (+) True XLOC_037457
TCONS_00073666 mRNA downstream 642773 52398531 ~ 52402015 (+) True XLOC_037461
TCONS_00073667 mRNA downstream 655772 52411530 ~ 52446996 (+) True XLOC_037462
TCONS_00073668 mRNA downstream 736881 52492639 ~ 52539704 (+) True XLOC_037463
TCONS_00073655 other upstream 855163 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073648 other upstream 1565379 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073638 other upstream 1870199 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073602 other upstream 5224503 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073600 other upstream 5834051 45821469 ~ 45821585 (+) True XLOC_037408
TCONS_00073665 other downstream 326553 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073706 other downstream 3492442 55248200 ~ 55248314 (+) True XLOC_037493
TCONS_00073716 other downstream 4160655 55916413 ~ 55916544 (+) True XLOC_037503

Expression Profile

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