RNA id: TU48808


Basic Information

Item Value
RNA id TU48808
length 1452
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G36431
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7152803 ~ 7154495 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTCAGAGCTCCAGTTCATTGCTTGGAAGTTACTGTCCTCATCTTCATTGTCAGTTAAGTCCAAGCCAGATAGCGGTcctttgtttttcttaaaaccgGACTTCCGACTGTATGTGTAGTGAGGTCTAGGCCTGCCCGGCAGCATTGAACCATCTGGCCCATAGTCAGCTTGTCCCATCTGGAAAGGCAGCAAGTGTCTCATTGCCTGTCTCTGACACTGACGTAGTCGACACTTCTGCCTCTTCTTGTTGCTGCCTCCAAACTTTGGTTTGTCTATACAGAAATCACATGTGCCACAGTCTTTCCTGCAGAGACAGGCTTTGCATTCTCCACAGGACCTTCGCTTCCGCTTCTTATGCCACTAAGGGCAAGTCAAgtgtataataaaaaaacaaaaagagagacattttaatgcaacaCTGCCAGTGGCAAAATTAATGTTGATAACAGATGACTTATAAGACATCTTTGtacaaaccacacacaaacactcatccAGGTGTGTAGTAACAAGTTACATTTACTCAGAGTAGTTTtaaagtagagctgcaaagattaatcgattagttttcAACTCTCACTTCAGTGATCGCGCACCGCCCCAACCCCTCCCCCATGCTAGTAGCTGAGGagaacacggaggattaaaaaaaaccatgatggactcttcagaagaggtcattatcttcactcgagctgtgtgggaaagtcaccggacgacataatcttctgaacatagccatactgagaaacacagagagagttgtgtggagctgatagccttaattagctttgtagcaactcatctggcgatggcttgaatgtaacggacgttcaataatatcaaagtTCCGCAATAAAGCTTTAATGCAGCATACTTTGTACTCTTACTCGAGTAGATTGTTTGAAATTTGACGAAAGAATTACCGGCATGGCGGTGAGTTAAAAGTGAGTTTATTCGGCATCCCATTTAGCCAATCAACTCTTTTCGATCAAAAAACACCTCAAGCgagtgtaaaaatgtttttgcgcAATTGAAGTTCGATTGAATTTTGCCATCTCCACTCAGCCTTTCTAATGCGACACTGGAAACATGACTTGTGATGGTACTTAGGACATCTAAACtggaaaaaaagtttaaagaaggtcccatgacatggtgctctttggatgcttttatatagtccttagtggtcccctaatactgtatctgaagtcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttcgtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtctcttttatatagaccttagtggtcccctaatactgtatctgaagtcttttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48803 lncRNA upstream 4112 7147991 ~ 7148691 (+) True G36426
TU48801 lncRNA upstream 5753 7146117 ~ 7147050 (+) True G36424
TU48787 lncRNA upstream 27175 7124942 ~ 7125628 (+) True G36412
TU48786 lncRNA upstream 29284 7123300 ~ 7123519 (+) True G36411
TU48784 lncRNA upstream 31365 7119896 ~ 7121438 (+) True G36409
TU48831 lncRNA downstream 30874 7185369 ~ 7187214 (+) True si:dkey-245f22.3
TU48832 lncRNA downstream 31602 7186097 ~ 7187214 (+) False si:dkey-245f22.3
TU48834 lncRNA downstream 37521 7192016 ~ 7192490 (+) True G36450
TU48859 lncRNA downstream 55501 7209996 ~ 7268670 (+) True G36458
TU48862 lncRNA downstream 55501 7209996 ~ 7268670 (+) False G36458
XM_039797831.1 mRNA upstream 62051 7082265 ~ 7090752 (+) False LOC120557474
XM_039797830.1 mRNA upstream 63694 7082265 ~ 7089109 (+) True LOC120557474
XM_039798612.1 mRNA upstream 211191 6882146 ~ 6941612 (+) True sema3fb
XM_039797955.1 mRNA downstream 28704 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797957.1 mRNA downstream 28704 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797595.1 mRNA downstream 134412 7288907 ~ 7306343 (+) True hcfc1a
XM_039797596.1 mRNA downstream 134412 7288907 ~ 7306343 (+) False hcfc1a
XM_039797600.1 mRNA downstream 158239 7312734 ~ 7317082 (+) True gata1a
TU48651 other upstream 514416 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1100034 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1228403 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 2218639 4911700 ~ 4934164 (+) True cdk5rap1
TU48863 other downstream 87714 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1073267 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1462503 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1487535 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1556514 8711009 ~ 8711080 (+) True trnae-cuc_6

Expression Profile