RNA id: TU49021


Basic Information

Item Value
RNA id TU49021
length 1471
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G36563
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7476134 ~ 7479379 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGTAGCTTTATTCAGTAGTAATATAAATGAGTTGAATCAGCAGACTGTGAGAAGCACCACTGGGCCCCTCATTGAAGGGACTTGTACTTTTCACATCAGAACCCACTTGATAAAAGGTTGTTAAAACATCTATTCAActtaagaaaaacattaacacaaagcagaaagaaaaagagatgagatcagtcacaaaaacaataccaaaaaaaataaaaattaatgtATGTGAAGTGACAGAGTTGACACACTGGTACATGACTTTACTGACAATGTGCTATAGTCTGCATTGGTTCTTCCATGCATCACTTTACCTTTATTTCTGCAGCTACAGTAGGTTTAGTGATCCCTCTGTATACTTTGTGACTTTTTCCGGCCTCACATCGCAGCAAATTTGGGTTACACAGAGATACAGCGACTCAAAATCAACGCATCCTACAAGTTCAGAGTTCACAACAGGAGAGACCAGTTAAAATAGTAAAAGTGTTGGTCtgtgcaatgaaaaaaaaagcctacAAGCTATTTTGAAGGAGGATTTCTCAAGTGTTTGtaaagacaattaaaaacaaagacaatgtgaaaaaaataaatacaagggGTTGGTGTTGGACAGTTGAGTCAATCATATGGTTTGACCAtttgaacacacaacacatctgAATGTAGTTATGGTTTCTGCTAGGAATGTGACTTTGATGGTGTATTTAATAttcaatatttaataatatGCATCTGGTAATATATTTCTTACATCCTCTTTTCTAATCACATAGTTTATTACAGAATCTCCTGGCATTGAGTTGCTTAGgagcgggatgagagagagacagacagagggagggagagagagagagagagagaaagagagagggagagggcacATAAGTTACTATGGGAGTGTGCAGGGGGTTGGGTGTGGTTTAGCAGGAGACTTCCATGGTCTGGGGTCCAGCCTGGTTGTCCAAGGCCCCCATGGCGCTGCCCTCCAGCAGGCTGTTGAGGTTGTTGCGGCTGCGACTGCTGTCCATGGACGTGATGCTGGAAGAGGAAGTGGTGCGTGAGCGAGCCAGGCGAGTCATTCCTGATGTCGGCACTGATTCGTTGCTGAGGTGACTGAGAAGAACGTAGGGAATGTAGCCCATTCCCTGCACAAAGTACTTGAAGGCCTCAGCAAGTTTCCCTGGCTGCGAACAGATAAAGGATCAAAGTTAGAGGATCATTTAGAGAAATTGCTTAATGATCAAACCTGAAACCTGAAAAACCAACCTGAACAACTTGGGGCAAGCCTCCACAATCCGCCATCTGGAGAAAATTATCAGTCACATTAATTCATTCTTTGTATAGTCAAAAACATTATATCATACATTTTATTCGTCAACAAATGTATTACAAAAAGTTTCACCTTTAGCAGTGTGGTCTTGGTTGGATTTAACCTGGAATTGCACTCCACCTGAAACATTAAATGAGAGGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48980 lncRNA upstream 21872 7378695 ~ 7454262 (+) True G36529
TU48909 lncRNA upstream 116402 7357751 ~ 7359732 (+) True G36485
XR_005638960.1 lncRNA upstream 145506 7329295 ~ 7330628 (+) True LOC120557355
TU48876 lncRNA upstream 169823 7295386 ~ 7306311 (+) False hcfc1a
TU48885 lncRNA upstream 202255 7273081 ~ 7273879 (+) True G36470
TU49029 lncRNA downstream 8517 7487896 ~ 7518266 (+) True G36568
TU49073 lncRNA downstream 41801 7521180 ~ 7525963 (+) True G36604
TU49078 lncRNA downstream 52338 7531717 ~ 7532203 (+) True G36609
TU49086 lncRNA downstream 64607 7543986 ~ 7546050 (+) True G36616
TU49087 lncRNA downstream 64607 7543986 ~ 7547035 (+) False G36616
XM_039799188.1 mRNA upstream 27116 7434210 ~ 7449018 (+) True myh7ba
XM_039799189.1 mRNA upstream 27116 7434618 ~ 7449018 (+) False myh7ba
XM_039799190.1 mRNA upstream 27116 7435874 ~ 7449018 (+) False myh7ba
XM_039799192.1 mRNA upstream 29414 7434210 ~ 7446720 (+) False myh7ba
XM_039799119.1 mRNA upstream 59854 7412789 ~ 7416280 (+) True snai1a
XM_039797580.1 mRNA downstream 230587 7709966 ~ 7727318 (+) False zmynd8
XM_039797578.1 mRNA downstream 230587 7709966 ~ 7727318 (+) False zmynd8
XM_039797582.1 mRNA downstream 230587 7709966 ~ 7727318 (+) False zmynd8
XM_039797587.1 mRNA downstream 230587 7709966 ~ 7726632 (+) False zmynd8
XM_039797581.1 mRNA downstream 230588 7709967 ~ 7727318 (+) False zmynd8
TU48863 other upstream 217184 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 837747 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1423365 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1551734 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2541970 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 748383 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1137619 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1162651 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1231630 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 1259588 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile