RNA id: TCONS_00073666


Basic Information

Item Value
RNA id TCONS_00073666
length 273
RNA type mRNA
GC content 0.55
exon number 3
gene id XLOC_037461
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 52386540 ~ 52402421 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcaGTGAAAGCAGGAGGAAAAAGAGTGGTGAAGAAGAGCGCTGATGAGAACGCCAACGTGGAGAAGGAGACCAGGAAAACGGACAAACCCAGGTCTGTGCTGGCCCCGTCCAGAATGCAGCATCTGAGTCTTCTTCTGTCTGGACCACTGGAGAAGTTGGGTCATGATTTCCCAGAGACTCCAGTTTCCGTGCGACACAGTCGGGTCAGACCGAGCGTGGAGAAACCGCACATCTCCCGCATCCCCTGCATTCAACAGCCACGCAAGTTCTGA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0061982 meiosis I cell cycle process biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007059 chromosome segregation biological_process
GO:0051304 chromosome separation biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0000280 nuclear division biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-000511-4 Predicted to enable death domain binding activity. Predicted to be involved in apoptotic signaling pathway; cellular response to amino acid starvation; and negative regulation of autophagy. Is expressed in several structures, including central nervous system; hatching gland; hypochord; neural tube; and pronephric duct.

Ensembl:

ensembl_id ENSDART00000126215

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075226 lncRNA upstream 392096 51962485 ~ 52006435 (+) True XLOC_037459
TCONS_00075225 lncRNA upstream 440914 51956025 ~ 51957617 (+) True XLOC_037458
TCONS_00075224 lncRNA upstream 622589 51765534 ~ 51775942 (+) True XLOC_037455
TCONS_00075221 lncRNA upstream 1257410 51137336 ~ 51141121 (+) False XLOC_037450
TCONS_00075223 lncRNA upstream 1257410 51137352 ~ 51141121 (+) False XLOC_037450
TCONS_00075228 lncRNA downstream 226229 52628244 ~ 52629286 (+) True XLOC_037465
TCONS_00075229 lncRNA downstream 606674 53008689 ~ 53010059 (+) True XLOC_037467
TCONS_00073682 lncRNA downstream 1323395 53725410 ~ 53734368 (+) True XLOC_037472
TCONS_00075230 lncRNA downstream 1499974 53901989 ~ 53908885 (+) False XLOC_037473
TCONS_00075231 lncRNA downstream 1501770 53903785 ~ 53908885 (+) False XLOC_037473
TCONS_00073664 mRNA upstream 514507 51882534 ~ 51884024 (+) True XLOC_037457
TCONS_00073663 mRNA upstream 593703 51784922 ~ 51804828 (+) True XLOC_037456
TCONS_00073662 mRNA upstream 642773 51655636 ~ 51755758 (+) True XLOC_037454
TCONS_00073661 mRNA upstream 1126934 51265283 ~ 51271597 (+) True XLOC_037453
TCONS_00073660 mRNA upstream 1137192 51225345 ~ 51261339 (+) True XLOC_037452
TCONS_00073667 mRNA downstream 9515 52411530 ~ 52446996 (+) True XLOC_037462
TCONS_00073668 mRNA downstream 90624 52492639 ~ 52539704 (+) True XLOC_037463
TCONS_00073669 mRNA downstream 211805 52613820 ~ 52616491 (+) False XLOC_037464
TCONS_00073670 mRNA downstream 211806 52613821 ~ 52624373 (+) False XLOC_037464
TCONS_00073671 mRNA downstream 211842 52613857 ~ 52624088 (+) False XLOC_037464
TCONS_00073665 other upstream 316094 52082311 ~ 52082437 (+) True XLOC_037460
TCONS_00073655 other upstream 1598058 50800357 ~ 50800473 (+) True XLOC_037446
TCONS_00073648 other upstream 2308274 50089000 ~ 50090257 (+) True XLOC_037440
TCONS_00073638 other upstream 2613094 49785320 ~ 49785437 (+) True XLOC_037435
TCONS_00073602 other upstream 5967398 46421027 ~ 46431133 (+) False XLOC_037412
TCONS_00073706 other downstream 2846185 55248200 ~ 55248314 (+) True XLOC_037493
TCONS_00073716 other downstream 3514398 55916413 ~ 55916544 (+) True XLOC_037503

Expression Profile

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