RNA id: TU49573


Basic Information

Item Value
RNA id TU49573
length 2407
RNA type TUCP
GC content 0.47
exon number 5
gene id LOC120558079
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8906439 ~ 9033667 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcacacgctcGCTCTGCCTCTCTGACACAGACTCTCTACTTAGTGCGTTGGAGAGAGGACTGAGGCTCACACTATCAGCACAGCTTCTCAATGGGGGGACGCAGCCAAGAGCAGACAGAGCAGTCATCACACTGGAGCCTTCCGCTGCACTCGTGAGAAGGAGACAGCAAGTGAGGAGGGGTAAATTAGCTCCCTGTCATCACAACATAGGAGTTCGACTGACGGAGAAGAGTCACAGACTGAAGGAAGGAGAAGATAAGAGATCTGCACGGTTGTGGCTGATAAAGTAGTGACATGCTCAGCCTCCCATCACCTCAAATCCTGGCCAGTTTGTGACACAGACCCCTGGGTGTTTTGCTTTTGCTGACTGTGTTGCCAAGGATTTAAAAAGGAACTGAGCACCGGGGGTCCAGAGGAGTGAATACtgaggggtgggtgggggggggaaacaGCATTTTAGCCCCTTTTGTGCGCTGTTCGGCTTCTCTGTTACTGGAATTTCGGGCTGGAATCCCTGGCTTCAAAGTATGGATGGATTTAAGACAGAGGAGTGAGTCTGCtgggcagacaggcaggcaggcagtgaTTCTGACTGAGCTCCTTtcctcctgaacacactgctCAGACTCGGCCTTACCATGTCCTGGTTGTTGGCCATGTGGATTAGCCTCGGCTTCCTGCTGTTGTGCCAGGCCACACTCTACCAGACCATCCAGCAGCACCATGTGGCCCGGCCTGGTCGCACCGACATTCTCACCCTGGAGGGAGGTACGTGTGAGGTGATTGCCGCCCACCGATGCTGTAACAAGAATCGTATTGAGGAGCGTTCTCAGACAGTCAAGTGCTCCTGTTTACCGGGGAAAGTGGCCGGGACAACACGCAACAAACCCTCCTGTGTGGATGCGTCCATTGTAATTGGAAAATGGTGGTGTGAGATGGAACCATGTCTGGAGGGAGAAGAGTGTAAGACTCTGCCTGACAACTCTGGATGGATGTGCTCCTCTGGGAACAAAATCAAGACCACAAGAATTCATCCCAGGACCTAACAGAGAGCTCCCATTGCAGGGCTGCGTGCCAGGCTCTTACCTTCATCTACCCTTGCTCTACCCACCGAACGGACTAAAACTATTACATCCACGGCTACTGACTGGATTACCTGGGACCACAGAAAGGATATCAACCCAGATAAAACAGATTTGCTCGTGTGGTGCCAAGGATTTGAAACCAGACTAATCCCCTGTTTGATCAATGAGCCCCATGTTGGTGACTCTCCTCTTCCACACAGCTGTGGCCAGTTTCCGACctactctctctctgtttccctccGCCGTCTTCCCCTCAAAAACTGAAAAGGCTTAGCAGGGGTTATTTAGAAGTTGTTAATACATTATATGAAGACGTTCGCCCTGCCTGAAGGTAAACCGGTTTAGGAGACCTGAACATGGGATCCACAGAACTGAGGGCAAAATGAGGGAAATTACCGTTATACCCTTTTATTTTTGTGGCAGGCATTTGTATTTGACTCGCTACCCCAGCAGGACGGCCTTGCTGTGACAACACTGAGGAGGTTTGGTTAAAAAACACTGAATTTTCAGTGACAGAGACCACTAACAGCCTATAATGAGTTAATGAAGAATCTTTGAGAGGCATTAGGGTCCACATGGCCTCACCTTCATCCTTCATGATGgacattttgacttttattCGTGGGCATGCCCGATGTAAATTCATGAGCACTTCTTTTCTTTGTATGTAAGATaatttgtgtgtatatacatatataaatacatcACATATAAGATGACAGATtcaaaaagctgaaaaatatatttaagacTCTATTAGGAGCTTGAGCCCCATGGTGGAATATTGATCGGCCACTGAATAGTACAGTTCATACTTATTCAGAGCCTGTTGTCCCAATACAGTAGGACGTTTGCAGTATATGCTTGCTTTGAAAAAAGCCACAACAGAGTCATAAATATAAGTATTGGTCACTTTCGTCATTCAGCAATGTCCTTGGTAAAGCCAGAACATGCTTGTAGTTTCTGTAAAGATGAGGAAAACACTGTATAGAACTGCCTCACAAACGAAAGCAGCACTAACAACAGCCCCTGAGCTTTCCACTAAGATACAGTAGGGACATAGAACAGCAGCAGAAAAACTCAGACCATAATCGGACAGTTAGTGTCTATTTCTGCTGTGGAATGTGGTCATGGGCGACTGCGTGACTGTGTTTGTCGTgtagatctctctctctctctctctctctctctctctctctctctcacaccagAGAGAGATGATTTATTCAAAATGACAGTGAGAAAGTATTAGTCACAATGGAGAAACATACAGTTATCCCCCAGAAGATATAAGTAAATAAAAGGACAGCCTTATGGGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49536 lncRNA downstream 102057 8802729 ~ 8804403 (-) True G36959
TU49457 lncRNA downstream 304804 8601433 ~ 8601656 (-) True G36894
TU49399 lncRNA downstream 465807 8439789 ~ 8440653 (-) True G36850
TU49382 lncRNA downstream 537465 8365752 ~ 8368995 (-) True G36840
TU49337 lncRNA downstream 573783 8332194 ~ 8332677 (-) True G36805
TU49581 lncRNA upstream 70682 9104254 ~ 9104498 (-) True G36992
TU49584 lncRNA upstream 111270 9144842 ~ 9150136 (-) True G36995
TU49601 lncRNA upstream 196489 9230061 ~ 9230399 (-) True G37007
TU49602 lncRNA upstream 196898 9230470 ~ 9230956 (-) True G37008
TU49727 lncRNA upstream 698109 9731681 ~ 9733378 (-) True G37073
XM_039798294.1 mRNA downstream 134254 8735108 ~ 8772206 (-) False fgd5a
XM_039798293.1 mRNA downstream 134254 8735108 ~ 8772206 (-) True fgd5a
XM_039798643.1 mRNA downstream 178387 8702692 ~ 8728073 (-) True LOC120557931
XM_039797020.1 mRNA downstream 206205 8678595 ~ 8700255 (-) False sfmbt1
XM_039799069.1 mRNA upstream 237363 9270935 ~ 9291346 (-) False LOC120558149
XM_039799070.1 mRNA upstream 237363 9270935 ~ 9291189 (-) True LOC120558149
XM_039798738.1 mRNA upstream 258822 9292394 ~ 9300961 (-) True kbtbd8
XM_039798521.1 mRNA upstream 367522 9401094 ~ 9456179 (-) False slc25a26
XM_039798522.1 mRNA upstream 367522 9401094 ~ 9456179 (-) False slc25a26
unassigned_transcript_196 other downstream 85659 8820730 ~ 8820801 (-) True trnae-cuc_11
unassigned_transcript_194 other downstream 90827 8815562 ~ 8815633 (-) True trnae-cuc_10
unassigned_transcript_193 other downstream 91543 8814846 ~ 8814917 (-) True trnae-cuc_9
unassigned_transcript_188 other downstream 238189 8668199 ~ 8668271 (-) True trnar-acg_12
unassigned_transcript_187 other downstream 240299 8666089 ~ 8666161 (-) True trnar-acg_11
TU49655 other upstream 361167 9394739 ~ 9395570 (-) True G37045
XR_005638890.1 other upstream 965425 9998997 ~ 10006173 (-) False LOC120556768
XR_005639075.1 other upstream 1458718 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 1460631 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 1501382 10534954 ~ 10536353 (-) False tpgs2

Expression Profile