RNA id: TU49621



Basic Information


Item Value
RNA id TU49621
length 982
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G37023
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9359504 ~ 9410661 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ttattgatttaaaaacggtCCTCCAGTCTTTGGTAAGAGCTGCGTCCATAGCACACCGCTGCTATGAATGAATAACAGATCGTAGAATGGCCCAaatgaccaatcagaatcgagtattcaacAAAGTCGTGTAATAAAGCTCTTTATAACACCATTGCTCTGTTGAATaccaaaaattttttttagttttttttgtcatgctaACTTTGATAAGCCTGCACTTTCACAGGCTTGAGATTAAGAAGTCTCTTCTTACAGCCTCTTCGACAATAGCGCCAATGTCAAACCATCCAATCAAGCTAAATACcgaataaaaatatatttcacaataaacatatatatagcCCAAACTGAAATACAAAAGCTGGTGCAGGACAATTGAGGCTCCTAATAAAACTAAAGCCTTGTTAAATTAACAAAGTGCTCTACTGTTGTAGACATCTTAAGTATAAAATTAAAGCTCCTGCAGGTGGATGAGCTCAGTTGTGCTCCAGCGGGAATGTAACAATGGTGAGATATTACCGAGTCTCTCCCCCGGTGGGTCTTTAACACAGGTGGCCTGGCTTAGCAGAGAGAAAAATATGGATAAAACACTAAAATGATCATGAAACCACGTAGAGGGGAGCTTAACAGGACAGCCTACAGAGGAACAAATGACCGAACCTCAACTCCAAGAGGTCAGTCTTTAATACCGTAACTCAAtgattctctcacacacacacacacacacacacacacacacacacacacagacacacacacacacacacagacagacagacagacagacagacacacagacagacagacagacacacacacagacagacagacagacagacagacagacagacagacagacagacagacagagacagacagacagacagacagacagacagacagacagacagacagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacagag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU49578 lncRNA upstream 169380 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA upstream 169411 9230464 ~ 9230923 (+) False G36990
TU49580 lncRNA upstream 169971 9230080 ~ 9230363 (+) True G36991
TU49576 lncRNA upstream 360565 9039463 ~ 9039769 (+) True G36988
XR_005639054.1 lncRNA upstream 460296 8885773 ~ 8940038 (+) True LOC120558080
TU49718 lncRNA downstream 321196 9731857 ~ 9733351 (+) True G37064
TU49739 lncRNA downstream 350386 9761047 ~ 9772228 (+) False prickle2b
TU49772 lncRNA downstream 517374 9928035 ~ 10006856 (+) True G37104
TU49780 lncRNA downstream 547174 9957835 ~ 9962577 (+) True G37112
TU49854 lncRNA downstream 641467 10052128 ~ 10052337 (+) True G37163
XM_039798187.1 mRNA upstream 1731 9360191 ~ 9398603 (+) True lrig1
XM_039797739.1 mRNA upstream 170353 9104336 ~ 9229981 (+) True suclg2
XM_039797740.1 mRNA upstream 170353 9104808 ~ 9229981 (+) False suclg2
XM_039798377.1 mRNA upstream 528168 8832264 ~ 8872166 (+) True tafa4b
XM_039798967.1 mRNA upstream 572955 8810821 ~ 8827379 (+) True eogt
XM_039797029.1 mRNA downstream 84623 9495284 ~ 9650337 (+) True magi1b
XM_039797033.1 mRNA downstream 84623 9495284 ~ 9650337 (+) False magi1b
XM_039797030.1 mRNA downstream 84623 9495284 ~ 9650337 (+) False magi1b
XM_039797034.1 mRNA downstream 84623 9495284 ~ 9650337 (+) False magi1b
XM_039797032.1 mRNA downstream 84623 9495284 ~ 9650337 (+) False magi1b
unassigned_transcript_198 other upstream 577603 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 578026 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 583937 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 592646 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 658557 8741706 ~ 8741777 (+) True trnae-cuc_8
TU49895 other downstream 894526 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 1586569 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 1941417 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 1980078 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 2369517 11780178 ~ 11805394 (+) True G37597

Expression Profile