RNA id: TCONS_00008428


Basic Information

Item Value
RNA id TCONS_00008428
length 672
lncRNA type antisense_over
GC content 0.43
exon number 3
gene id XLOC_003692
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 42127415 ~ 42131907 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACGGGACCACTATCTGCACACGTTGTTGGAGGCATCGCGCAAATAGagGATTTCCTCGCAGGGGGTTTGAGGACCGTGAACACCCACCAGGAGCATGTTcttccctgatgaataaaagcacAAACACAAGGTCTCACCAGCTTTACTGCAGTCAACAGTGAAAGAGGCTTTCTGGCTGATGAAGGCCTTGCTGAGTCCAGGGCCTCGACTGCTGACCCTGCTGGCAGACGAGCTGGTGGAGCGAGTCACGGAATCCACCATCAGACATGACATTTCACTCACGCTGCTCACGTTCACCAGACGCGGACCTGAGGAGAAAAACACTCATCATTACAAAAGTCACTAACACCCTGATCACACACAGTGTTGGGGGAAGTTACTTTTGAAATAATGGACCCTTTTTACGTGTTTAGCTCTCATCAGTATCTTAAATCCCtagaagtttttaatatttaaatttgattgaaaaaaatgtatgagcatttatatgcatttacatatgtattatatcatctttgcatcaaatgacaaaaaaatagttACCGTTTGTGCGAGGCGTTTGAAGGCGTACAGAATGTATTGGTGCAAGACAGTAAATTTGACCTTGTTCTCTTCTCTGTGCACAGTGAgacttaatttatatttaataaattcaaaattattaCATCTGC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0000307 cyclin-dependent protein kinase holoenzyme complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00008427 lncRNA upstream 29124 42098047 ~ 42098291 (+) True XLOC_003691
TCONS_00008685 lncRNA upstream 57751 42042559 ~ 42069664 (+) False XLOC_003689
TCONS_00008426 lncRNA upstream 57751 42057856 ~ 42069664 (+) True XLOC_003689
TCONS_00008425 lncRNA upstream 72814 42053251 ~ 42054601 (+) False XLOC_003690
TCONS_00008686 lncRNA upstream 73260 42053257 ~ 42054155 (+) True XLOC_003690
TCONS_00007156 lncRNA downstream 173182 42305089 ~ 42418374 (+) True XLOC_003693
TCONS_00007166 lncRNA downstream 440335 42572242 ~ 42572982 (+) True XLOC_003700
TCONS_00008429 lncRNA downstream 661671 42793578 ~ 42798751 (+) True XLOC_003705
TCONS_00008687 lncRNA downstream 707943 42839850 ~ 42844948 (+) False XLOC_003707
TCONS_00008688 lncRNA downstream 707947 42839854 ~ 42883298 (+) False XLOC_003707
TCONS_00007155 mRNA upstream 142928 41981959 ~ 41984487 (+) True XLOC_003686
TCONS_00007154 mRNA upstream 167139 41936435 ~ 41960276 (+) True XLOC_003685
TCONS_00007153 mRNA upstream 197909 41858807 ~ 41929506 (+) True XLOC_003683
TCONS_00007152 mRNA upstream 277329 41838036 ~ 41850086 (+) True XLOC_003682
TCONS_00007151 mRNA upstream 427511 41560792 ~ 41699904 (+) True XLOC_003681
TCONS_00007157 mRNA downstream 290464 42422371 ~ 42459902 (+) False XLOC_003694
TCONS_00007158 mRNA downstream 290731 42422638 ~ 42447520 (+) False XLOC_003694
TCONS_00007159 mRNA downstream 290766 42422673 ~ 42452486 (+) True XLOC_003694
TCONS_00007160 mRNA downstream 342787 42474694 ~ 42477289 (+) False XLOC_003695
TCONS_00007161 mRNA downstream 342809 42474716 ~ 42477772 (+) True XLOC_003695
TCONS_00007149 other upstream 662179 41465107 ~ 41465236 (+) True XLOC_003680
TCONS_00007137 other upstream 969487 41110669 ~ 41157928 (+) False XLOC_003675
TCONS_00007139 other upstream 969489 41135609 ~ 41157926 (+) True XLOC_003675
TCONS_00007131 other upstream 1238121 40889180 ~ 40889294 (+) True XLOC_003670
TCONS_00007127 other upstream 1471544 40649471 ~ 40655871 (+) False XLOC_003667
TCONS_00007172 other downstream 493464 42625371 ~ 42625487 (+) True XLOC_003703
TCONS_00007182 other downstream 912919 43044826 ~ 43044949 (+) True XLOC_003709
TCONS_00007198 other downstream 1892855 44024762 ~ 44024878 (+) True XLOC_003725
TCONS_00007203 other downstream 2192854 44324761 ~ 44326292 (+) False XLOC_003732
TCONS_00007204 other downstream 2192854 44324761 ~ 44334911 (+) False XLOC_003732

Expression Profile

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