RNA id: TU49655



Basic Information


Item Value
RNA id TU49655
length 686
RNA type TUCP
GC content 0.65
exon number 2
gene id G37045
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9394739 ~ 9395570 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTAATTATTTCGGATGCTGTGCGGGTCTTCAGAGACCGCGTTATGCGTCACACCAACTTTGCTCACGGAGAAACTGCCAGGCAGCGAAACCATTTGGCCCGGCCGAGCCGAGTCTGAACCATCTCGTACCTGTGGTGTCTACGATGTGTCCGTTGGGCTGAGGGCCGCCGCCGGCCTCCACGCGGATACACACATCCTGCCGCTCGGACAGCGTGCCCTGGGAGGACAGGTAGCTGGGTACGTCTGGAGGAACTATCGTCTCATCTGGTGTTGGTGACACTGCACTCCTCGCTCTTCTTCCTGGTCTGGTAGATGATGCAGACCCACACCAGCGACGTCACCACGATGCTCGTCACCACGGCGATGACTATGATCCCGATCGTGACCGTGCTCGGCCCCGCCGAAGGCGTGCAGGGGCCGCGGCGCTGAGTCACCACCACCTGGCTGTGAGCGCGCTCCGTGCCCAGGGCATTGGACATGAGGCAGGTGTAGCGGCCGGCGTCCTCCAACGACGCCGAGCCAATGACCAGCAGCTGGTTCCCCGGGGTGAAGTGGTGTCTGTCGGAGGGGCGCAGCGGCTGGTCGTCGCGCAGCCAGGTGATGCGCGGCGGCGGGCTGCCCAGGGCCTTGCACTGCAGCGCCACCGTGTCGCCGACCGCCACGCTGCGGTCCTCCAGGTCCTGGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU49602 lncRNA downstream 163783 9230470 ~ 9230956 (-) True G37008
TU49601 lncRNA downstream 164340 9230061 ~ 9230399 (-) True G37007
TU49584 lncRNA downstream 244603 9144842 ~ 9150136 (-) True G36995
TU49581 lncRNA downstream 290241 9104254 ~ 9104498 (-) True G36992
TU49574 lncRNA downstream 467059 8906460 ~ 8927680 (-) False LOC120558079
TU49727 lncRNA upstream 336111 9731681 ~ 9733378 (-) True G37073
TU49756 lncRNA upstream 484469 9880039 ~ 9883031 (-) True G37093
TU49800 lncRNA upstream 490792 9886362 ~ 9887416 (-) True G37125
TU49825 lncRNA upstream 596119 9991689 ~ 10029489 (-) True G37142
TU49834 lncRNA upstream 618157 10013727 ~ 10015053 (-) True G37145
XM_039798738.1 mRNA downstream 93778 9292394 ~ 9300961 (-) True kbtbd8
XM_039799069.1 mRNA downstream 103393 9270935 ~ 9291346 (-) False LOC120558149
XM_039799070.1 mRNA downstream 103550 9270935 ~ 9291189 (-) True LOC120558149
XM_039798931.1 mRNA downstream 361077 8906439 ~ 9033662 (-) False LOC120558079
XM_039798294.1 mRNA downstream 622533 8735108 ~ 8772206 (-) False fgd5a
XM_039798521.1 mRNA upstream 5524 9401094 ~ 9456179 (-) False slc25a26
XM_039798522.1 mRNA upstream 5524 9401094 ~ 9456179 (-) False slc25a26
XM_039798520.1 mRNA upstream 12155 9407725 ~ 9456179 (-) True slc25a26
XM_039798523.1 mRNA upstream 13309 9408879 ~ 9456179 (-) False slc25a26
XM_039798524.1 mRNA upstream 13312 9408882 ~ 9456179 (-) False slc25a26
XR_005639051.1 other downstream 361072 8907782 ~ 9033667 (-) True LOC120558079
XR_005639053.1 other downstream 361080 8906439 ~ 9033659 (-) False LOC120558079
TU49573 other downstream 361167 8906460 ~ 9033572 (-) False LOC120558079
XR_005639052.1 other downstream 362248 8907782 ~ 9032491 (-) False LOC120558079
unassigned_transcript_196 other downstream 573938 8820730 ~ 8820801 (-) True trnae-cuc_11
XR_005638890.1 other upstream 603427 9998997 ~ 10006173 (-) False LOC120556768
XR_005639075.1 other upstream 1096720 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 1098633 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 1139384 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 1536839 10932409 ~ 10943628 (-) False fam219aa

Expression Profile