RNA id: TU49836



Basic Information


Item Value
RNA id TU49836
length 701
lncRNA type inter_gene
GC content 0.43
exon number 4
gene id G37146
representative True

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10015379 ~ 10016724 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTGTACAAAAACATCCAAGGTAGGATGGCAGACAACAATGgcttttaaattttaaaagtcTATGAACAACATACATTTCATGGCAGACGGGTTAGATGAACAGGTCTACTTTACAAGTCTAACTCTGTCTTTCAATACTCTAAATTTGGGATTGTTGTTGATCTTCTTGTTGAAAAGTGCTAGCACTTCTTCCTCCTTTTTAAAATTTCCATCCCCAGTGAAAGAGTAGTATGCTGCCAAAACCTTCTTCCTGAGTTTCTTTACGGGCAGTTCCTGGTCATCTGAGTCTCTCAGTACTGCCTTGATATTTCCCTTCCAGTTGAATTTGCCTTTGGGAACTTCTTGATCCTCAGTCTCCTCTGACATGTCAGCAGCCTCTTGGTCAACTGTCTTTGTTTTCTTGCTGGATGTCTTATTTTCAGCACTGTTCTGCTCTTCACCTCCGTCTTCCTCACAGCTGTGCTTTCTCTTTcggtccttttttttctttttgccttCTTCTGGCTCCTGTGCCACCATCTTTTCAGCAGCTTTTAAAGCCTTCCCATTTTTCTGCTGACGGGCTTCTTTACGCTCCCGTTTGTTCAGTTTCTTCTTCGCAACTTCTGGATGGCCGTTCTGCTTTTCATTTCCATTAGTATCCACTTTGACTTCAGCCACTGTCTGTTTAGCTTCTTTAGTCTCCTGGGGGGCCTCAGAAG

Function


GO: NA

KEGG:

id description
ko03020 RNA polymerase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU49834 lncRNA downstream 326 10013727 ~ 10015053 (-) True G37145
TU49800 lncRNA downstream 127963 9886362 ~ 9887416 (-) True G37125
TU49756 lncRNA downstream 132348 9880039 ~ 9883031 (-) True G37093
TU49727 lncRNA downstream 282001 9731681 ~ 9733378 (-) True G37073
TU49602 lncRNA downstream 784423 9230470 ~ 9230956 (-) True G37008
TU49849 lncRNA upstream 25523 10042247 ~ 10043822 (-) True G37158
TU49850 lncRNA upstream 27444 10044168 ~ 10044435 (-) True G37159
TU49856 lncRNA upstream 43080 10059804 ~ 10060407 (-) True G37165
TU50000 lncRNA upstream 235434 10252158 ~ 10252553 (-) True G37260
TU49993 lncRNA upstream 240535 10257259 ~ 10260360 (-) True G37258
XM_039796491.1 mRNA downstream 1660 10007330 ~ 10013719 (-) True zbtb49
XM_039796492.1 mRNA downstream 1762 10007330 ~ 10013617 (-) False zbtb49
XM_039796489.1 mRNA downstream 9206 9998996 ~ 10006173 (-) False LOC120556768
XM_039796490.1 mRNA downstream 9206 9998996 ~ 10006173 (-) True LOC120556768
XM_039799171.1 mRNA downstream 19624 9967082 ~ 9995755 (-) True LOC120558214
XM_039797560.1 mRNA upstream 85005 10101729 ~ 10201751 (-) False slc2a9l2
XM_039797555.1 mRNA upstream 85005 10101729 ~ 10200743 (-) True slc2a9l2
XM_039797561.1 mRNA upstream 85005 10101729 ~ 10200742 (-) False slc2a9l2
XM_039797559.1 mRNA upstream 85005 10101729 ~ 10200741 (-) False slc2a9l2
XM_039797557.1 mRNA upstream 85005 10101729 ~ 10196642 (-) False slc2a9l2
XR_005638890.1 other downstream 9206 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 619809 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 981712 8907782 ~ 9033667 (-) True LOC120558079
TU49573 other downstream 981807 8906460 ~ 9033572 (-) False LOC120558079
XR_005639075.1 other upstream 475566 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 477479 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 518230 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 915685 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 915685 10932409 ~ 10943628 (-) False fam219aa

Expression Profile