RNA id: TU49856


Basic Information

Item Value
RNA id TU49856
length 508
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G37165
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10059804 ~ 10060407 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCACCGGACCCTTGGATAAAAAGGACAGAACAGGAACAGGGCAGAGGCCCATGGGAGAAGGAGGAGGCCATGGAGAACATGAGGAAGGCTTGAGAGTATGGGAAAAGACACACATGGAGAGATGCTTGGAAGATGGGAGAGCACACCAGAGGAAACGCTGAAAGCACGACAGAGCATACGGAACAGGCGGAGAAGCACACAGGAGATCAgacgaaaagaaaagaaaaagaacctTAGAGGAGCCCTGAAGCTACAACGAAGGAAACGCCAACAACGACCGCTAGCGGCAAAAAGTGGGAGAGCGTAAAACCTCTCCCTCCCACGTTATGCCCGGGGAAGGTGACCTATGAAAAGGAGGCTGATTCTTGGCAGAGCCCTGTGGACGTTTTAAAGCCGAGACTCCTGTCCCGTAGGActgtttaacttttattttagtggttgtgtttttagtttaagtttgtttttttttttttttaaaaggaggaatttttattgttttatcctttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49850 lncRNA downstream 15369 10044168 ~ 10044435 (-) True G37159
TU49849 lncRNA downstream 15982 10042247 ~ 10043822 (-) True G37158
TU49825 lncRNA downstream 30315 9991689 ~ 10029489 (-) True G37142
TU49836 lncRNA downstream 43080 10015379 ~ 10016724 (-) True G37146
TU49834 lncRNA downstream 44751 10013727 ~ 10015053 (-) True G37145
TU50000 lncRNA upstream 191751 10252158 ~ 10252553 (-) True G37260
TU49993 lncRNA upstream 196852 10257259 ~ 10260360 (-) True G37258
TU49994 lncRNA upstream 196852 10257259 ~ 10260360 (-) False G37258
TU49998 lncRNA upstream 196852 10257259 ~ 10270411 (-) False G37258
TU49974 lncRNA upstream 232691 10293098 ~ 10302511 (-) True G37245
XM_039796491.1 mRNA downstream 46085 10007330 ~ 10013719 (-) True zbtb49
XM_039796492.1 mRNA downstream 46187 10007330 ~ 10013617 (-) False zbtb49
XM_039796489.1 mRNA downstream 53631 9998996 ~ 10006173 (-) False LOC120556768
XM_039796490.1 mRNA downstream 53631 9998996 ~ 10006173 (-) True LOC120556768
XM_039799171.1 mRNA downstream 64049 9967082 ~ 9995755 (-) True LOC120558214
XM_039797560.1 mRNA upstream 41322 10101729 ~ 10201751 (-) False slc2a9l2
XM_039797555.1 mRNA upstream 41322 10101729 ~ 10200743 (-) True slc2a9l2
XM_039797561.1 mRNA upstream 41322 10101729 ~ 10200742 (-) False slc2a9l2
XM_039797559.1 mRNA upstream 41322 10101729 ~ 10200741 (-) False slc2a9l2
XM_039797557.1 mRNA upstream 41322 10101729 ~ 10196642 (-) False slc2a9l2
XR_005638890.1 other downstream 53631 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 664234 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 1026137 8907782 ~ 9033667 (-) True LOC120558079
TU49573 other downstream 1026232 8906460 ~ 9033572 (-) False LOC120558079
XR_005639075.1 other upstream 431883 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 433796 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 474547 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 872002 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 872002 10932409 ~ 10943628 (-) False fam219aa

Expression Profile