RNA id: TU49868


Basic Information

Item Value
RNA id TU49868
length 1854
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G37177
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10204789 ~ 10206757 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAAATgcataaaaagttttttttattattattattattattcatgaaTTACTTCCACCTTGGAAGCAGATGCATAAAGACAGGGGGAAACAAATAAGTGCGACAAGCATAGCGGgcccaaacaaaaacacagcatcaACACGGGACCTTCAACTAAACAGACAGCATCTTGATTGTATACATACTCTGTCCTTTCAGTTCCCATTATTGCTCCCGAGTCCAACAGGAAGAGTTGTGAAACATAAAAGTATGAAACCTAAGACAAAGCAAAACACCCAACCCCTTAAAACCAAAAGGTTTAATTTCTTTCAAACATGattgttgatttaaaaaaaaaaaaagaagaaactcGCTTTTAGTTTATCCATTAAGTTAGGATGCATTGAGCCAAACCACAGACAAGAATTTTGGTTTAAACTGAGTGAAAGCTATTACCTATGGAATGTTGAGCTTACAAATATTACTGTGGGTCCATCAAGCTCAAAGAGATGTAAAACAACTCGTGGTTACATcatatatttcaaatatttgtCTCCGTGTAAGTTGAGGTTATCTGCATGAAAGAGACGTGTCTTGGATTATTTTTTAGGGGAGCTTTCCCCAGCCATATCAATTCACAATTTCAGATGTTTACAGACCGCATAGAACACCGTATAGATAGTGaaaatacagtttaaaaaaaaaaaaaaaaaaaatgaaaacagaaggAAAGATTGAATTCTACAGTAGTCCTTGTCCCTGGAGATGTGGATGTTTGTCTGCTTGCAGCTCAGTATTTAACAGTCCACTGCTTGATGCTGGCATCATGGGAGGTGGTGACTAGAGTGTGCTCATTGACCCAGGCCAGGCCACTAACATGGTGCAACCGGTGAGTGTCTGCAGACATCAAAGCATCAAACAACCTTGTTACAAAAAAAAGGTCTTTGGCAGAGGAAAGTATTACATTAAAATACTAATATTTGCAGCCAAATACATTTGCTCAACAATCAATACATACTGAACTATGACTTCAAGTTATAATTAAGATTTTTTATAAAATCAAACCCTGTTTTTTGATACCATTTATGGTCACCATTTTATGCATTTATATTCTgtaatcaacaaaaaaaaatgtaaacaaaaaaaaacatttcctacTGCTGCTACAGACCACATGCCTCCAACTACACAGCAAAGTCACCAACTTCACTGTGCCTTGCTGGTGTGCGGAAAACTTCCCggtattattatttaatgactcatttatcaaaaacaacacaagctCGTTTGGCTGCACTGTAAACAAATACACGGGTTGTTTTTCGGTTTTATTAGCTGCTTGCAATAGTAATAAACCACATTTGTGGTTACTTTAAGTCCAGCTACATGCACTAAATGCATGATTTATCCGATTTATCTTTGATTTTGCATGTCTGGACATATTGCTGCTAAGCGGATTTATATAGCTCAAACAGAGCAACTTCCACATCTGTGTATACCTGCGTGCATGCCAGGCATACTGTGAAGTGAATGCATATGTGCACGTGTATGGCCTACCTGCCAGCTTAATCCTGTTGTCTGGATCACCAATTGTCCAGATAAACACCATCATGTCCATCCCACTAGTCGCAAAGTGCTCATTGTCAGGTGACCAGGCCAAAGTTACAGTTCTGGCATGGTGTCCGTAAAACTCATCTTTGACCtgTAGCCGTCAGCCACAGTAAAAGTTGTGGCAACTTTCTTATCATCTATGGCAGCGAGATAGGCTCCATCATTAGAGTAGGCCATGTCTGTGATCGCCCCTTTAGCCTCGATAGTTTTACCCTGGTCCTTCAGAGTGTTGCCCTGAATGGAGTACAGATGGATTTTCCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49854 lncRNA upstream 152452 10052128 ~ 10052337 (+) True G37163
TU49772 lncRNA upstream 197933 9928035 ~ 10006856 (+) True G37104
TU49780 lncRNA upstream 242212 9957835 ~ 9962577 (+) True G37112
TU49739 lncRNA upstream 432561 9761047 ~ 9772228 (+) False prickle2b
TU49718 lncRNA upstream 471438 9731857 ~ 9733351 (+) True G37064
TU49881 lncRNA downstream 50493 10257250 ~ 10260329 (+) True G37186
TU49882 lncRNA downstream 50493 10257250 ~ 10260329 (+) False G37186
TU49897 lncRNA downstream 103310 10310067 ~ 10311163 (+) True G37198
TU49907 lncRNA downstream 181155 10387912 ~ 10396157 (+) False glrx
TU49915 lncRNA downstream 195501 10402258 ~ 10434702 (+) False G37215
XM_039796494.1 mRNA upstream 160240 10040300 ~ 10044549 (+) True drd5a
XM_039796493.1 mRNA upstream 165915 10029586 ~ 10038874 (+) True otop1
XM_039796497.1 mRNA upstream 175302 10016907 ~ 10029487 (+) False tmem128
XM_039797081.1 mRNA downstream 12969 10219726 ~ 10229981 (+) True idh3b
XM_039797082.1 mRNA downstream 12999 10219756 ~ 10230679 (+) False idh3b
XM_039797080.1 mRNA downstream 26135 10232892 ~ 10257094 (+) True ptpra
XM_039798346.1 mRNA downstream 57671 10264428 ~ 10266475 (+) True gnrh2
XM_039798950.1 mRNA downstream 60058 10266815 ~ 10274959 (+) False zmat1
unassigned_transcript_198 other upstream 1382058 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 1382481 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 1388392 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 1397101 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 1463012 8741706 ~ 8741777 (+) True trnae-cuc_8
TU49895 other downstream 98430 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 790473 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 1145321 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 1183982 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 1573421 11780178 ~ 11805394 (+) True G37597

Expression Profile