RNA id: XM_039798072.1


Basic Information

Item Value
RNA id XM_039798072.1
length 2397
RNA type mRNA
GC content 0.58
exon number 13
gene id rhobtb3
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10387917 ~ 10419906 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctctctctctctctctctctctctctctctctctcctcccaaatgTTCTTTGCCAGTGAGACTTTGTTTCATCCGCCGACGTCATTCATATGGTCTGGACGCTGAGGCGCGAGGCTGCCCTCTCCTCGTAGCTAATTGTGTTTCCTACCGACGGACAACTTGTTTGTCTGTTAGCGCAGTGGCTGCCTGGCTGCCCATGGGCGCTGAGCACACACTCTGCTGCTCTGCCGGCTGGGCTGTCCGATGCCCCTCTGCGCTCGGTTCGGGACGGTATCGGGCTCCGGTTTTATGAATGAATAACAAGACGGGAAAATGCGAGTGACTGCGAAACTCCCCAGCAGCCGCGCTCCCGGGGGGCCAGCCACCGATGAGAGGGATTAACGACGGAGCGGAGCCGTGGCTCATTGCGGAAAAGCCGACTGCAGACTGGCGTGGAAACGCACCGTGAGGGAAACGGGCTCCATAGCGTAGAACAGCGGAACAAAACCGCGGTGACCACAATGTCCATCCACATCGTGGCTCTGGGCAGCGAGTGCCCTGGAGGAATTGGCCTCGGGGAGGAGATCATGGGCCAGGGCCAGCTGCAGGGAGGCCTGCTGTGGAGCTACCTTGGCCATGGGGCACTGGTGGGACCCTGTGACCTGGAGAGCAGCATTCACAACCCGGCCTTCATGGAGTACACCTCACGTGTGTTTGGAGATGTCACTGTAGTGGTTCGGGATTGCCCCAGCTGGGACTTGTTGGACAGCGATTGGGCCAGCGTACGGAAAGTTCTTGAGCAGGCGGACATCCTGGTCATTAAATATTCAGTCACTGACAAGCTGGCCTTCCAGCAGGTCAGGAACAGCTACGCCCCGAGACTCCGCCCGCTCCTGAGGCACTGGGGTGTGCCTGTCATCCTGGTTGCTGTTGGAGCGCGGCTGAATGATGAAGGCCCTCCATGTACGTGCCCGCTGTGTGCGTCTGACTGGAGCAGCTGTGTGCCTCACAGTGAAGGTCTGCAGCTGTCCCGGGACCTGGGGGCCACTTACCTGGAGTTGCCCTCTCTCAACCACGTCTTTGTGGGTCGCTACTTTGGCAGCGTGCTGGAGTACTTCATGATTCAGTGTCTGAAACACAAAGCCAAAGAAAGgccagagaagaggagaggaaataaAGTGAACGAGCTTTGTCCCCCTCACTTAGAACAACCAGCACGTCTTCCCCCCATCCGAGTAGAAGAGTCCAGCTTCTCCCAGGACATGCAGTGGTTGTTGGAGCGTGGCATGCAGTTCGCCGATGTGGCTTTCTACGCCGGGGACTCTGGGAAAGAACTGGGGTGGGCGCATGCGGCTGTGCTGTGTGCTGTCAGTCCGTACTTCAGACAGCTGCTCCTGGGGCACAAGACCAGGGAACGCCCCCAGTCGCGGTGTGTTTGTAGAGAGCGGGAAGGAGGTCCCCAATCGCTGCTCTCCACCTGGGATGGTGGGATTATTGATGACATGCCCCGATCAGAGGGGCACCTGACAGGACGTCTCTCTCGTCTGGTGGTGAAGGACCCCCTTCTGTGTATGTGCTTGTGGGAGACACTCATGTTCATTTATAGAGGAGCGTGGGAGTGGGATCACCTCCAGGAGGCCCTGGAAGAGAAGCTGAAGAATTCGCTAGCAGTGGCTCAGCTTATGGAGCGCATACGATCCCTCATCGGCAGAGACAGGggcCCCAGGGACACCCCGAGTGCCCGGGCAGCTCAGCTCGGCCCCCAGACTCTTGTCAACCTCTTCAATTCTCCTCTTTACTCTGATGTCATCTTCATGGTGCAAGGGAGTGTGTTGCCAGCCCACCGAGCAGTGCTGGTGGCGCGATGTGATGTCATGGCGGCCATGTTCAGTGGGAAGTATGCAGAGGCCCGGAGCCGAGTGGTGCCTATTCACGGTGTCTCCTCAGATACCTTCCTGTCTTTCCTGGAGTACCTCTACACTGACTCCTGCTGTCCTGcCAGTGTGCTGCAGGCCATGGCCGTGCTGGTCTGTGCTGAGATGTACCAGGTGAAACGTCTGCAGCATCTGTGTGAAGTGTGCGTGTGCGCTTACCTTCAGAGCATGCCCAGTAGAGAGCTGTCGTCAACGGGTATCAGCGTGATTCGACTACTCCGCCGAGCAAAGTGCCACAATGCAGAGCAGTTGTATGTCTGGCTCCTCCACTTTATCTCCAACAACTACCTGATCTTCAGTCACAAACCTGACTTCCTGGAGCTCTCAGAGGAGGAGCGTGAGCAGGTAGAGAGGCTACGCTGGCCGTCCAGAGGCTACCTGCAGGAGCTCAGCGAGTACCAGCACCGGCGACGCAAGCTACGCAAGTCCCGCTGCATAGTAATGTGACCCTGCCTGGATGCCTAAAACCTGTGAAAAACAGGG

Function

GO: NA

KEGG:

id description
K07869 RHOBTB3; Rho-related BTB domain-containing protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50017 lncRNA downstream 84534 10310109 ~ 10311154 (-) True G37276
TU49974 lncRNA downstream 93177 10293098 ~ 10302511 (-) True G37245
TU49998 lncRNA downstream 125277 10257259 ~ 10270411 (-) False G37258
TU49993 lncRNA downstream 135328 10257259 ~ 10260360 (-) True G37258
TU49994 lncRNA downstream 135328 10257259 ~ 10260360 (-) False G37258
TU50051 lncRNA upstream 34055 10453961 ~ 10456420 (-) True G37305
TU50074 lncRNA upstream 68894 10488800 ~ 10490052 (-) True G37321
TU50126 lncRNA upstream 132387 10552293 ~ 10553381 (-) True G37361
TU50133 lncRNA upstream 240880 10660786 ~ 10661268 (-) True G37364
TU50216 lncRNA upstream 546651 10966557 ~ 10974888 (-) True G37418
XM_039796750.1 mRNA downstream 62305 10294535 ~ 10333383 (-) False cast
XM_039796754.1 mRNA downstream 62306 10294535 ~ 10333382 (-) False cast
XM_039796766.1 mRNA downstream 62307 10294535 ~ 10333381 (-) False cast
XM_039796770.1 mRNA downstream 62308 10294535 ~ 10333380 (-) False cast
XM_039796779.1 mRNA downstream 62309 10294535 ~ 10333379 (-) False cast
XM_039799092.1 mRNA upstream 1938 10421844 ~ 10424787 (-) False rfesd
XM_039799093.1 mRNA upstream 1938 10421844 ~ 10423913 (-) True rfesd
XM_039798074.1 mRNA upstream 14294 10434200 ~ 10442069 (-) True ube2r2
XM_039798073.1 mRNA upstream 14294 10434200 ~ 10442068 (-) False ube2r2
XM_039798047.1 mRNA upstream 71410 10491316 ~ 10497248 (-) True nop56
XR_005638890.1 other downstream 389515 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 1000118 9394739 ~ 9395570 (-) True G37045
XR_005639051.1 other downstream 1362021 8907782 ~ 9033667 (-) True LOC120558079
TU49573 other downstream 1362116 8906460 ~ 9033572 (-) False LOC120558079
XR_005639075.1 other upstream 72384 10492290 ~ 10492357 (-) True LOC120558246
XR_005639079.1 other upstream 74297 10494203 ~ 10494322 (-) True LOC120558250
TU50114 other upstream 115048 10534954 ~ 10536353 (-) False tpgs2
TU50209 other upstream 512503 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 512503 10932409 ~ 10943628 (-) False fam219aa

Expression Profile