RNA id: TU50106


Basic Information

Item Value
RNA id TU50106
length 4955
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G37342
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10554032 ~ 10559006 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTAGACTGTGCTTTATTATTGGGCTAAGCTGAGACgcatcattcatttaaaattacaaaaaaagagtTCAGGGGACCATAGAATGGTGCAGTCTGGAGAGACAGGGACGGGAGCCTAAAGCGCACTGCCCAATCAGAAGCTTAGCTCATCAGGAACCCGGCAAAGCTTAATATGCAACATTCATTTCCCCACCCTCCATATGTGCTGAAATTGGGAAATAGATTTCCAGAATACTTTGAAAACCATATGAGGGAAAATGTGATTCTAGCAACACTACTGAgctttagaaataaaactacTAACAACAGCACTGAAAAGAAGCATAGTAACTCAATTGTTTTTGATGAGATAGTGCagttttcattgaattttgctCTTGGTAGAACACATCAGTTGAACAAGATCAGAGCTCTGTCAAACAATACAAAGCAAGATTGGATAAACAGGAGAAGGGGAATAAAGTTTTAGAAATCCAAAATGGTGTTTTATGCAGGCAGTTTAGCAATTCGTCAGACATTAGCTCCTTACACATTAGCAGCAACATATAGTGACCTCAAGGCATATCTTATGTTGTGATTACATATCTGACTGAACAGTTGGTTTATGAGGGAGTGGTTAACTAGGAATTGcccctttttttcactttgattTAAGGTTTCACAATATAAGCAAATGGTATTCAAAATGACAGACAAACCTCCAAttggcatctttttttttttttttttaacaatcttTACCTAAGCTAACATTTTGGAACAGAACAATAGGATTTTATAATAACAAATATACATAAGGCTTTAGTAGTGTACTGCATTGTTTTGAATAGTTTATCAGCAACAGGAAAATGTAAAATCAGTCTTTGAAGTTGTTAAATTCAGAGTTCGCCAATACGTCCAAGTGGTGTTATGTGATGTAGTGATACAAAGTAGCACTGACAAGCAAATCGATCAGTGGCAATAAGAGCTCAGATCTTGAATCAAACAGCacgaataaataaatacttaactacaaataaataaataaataaagacataaataaatgattaaaaatatGTCTTTGACATCACTTGGTCAGTAGGAGCATTTTTCCACATCATCAAAGAAGTGCTGAAGGCATGGTCCTGCAGACAGGAATAATGATCATCTGTGGACCACAACAGTGGCCCATGCATgtcatataaaaactatttGGTCACATACCAACTCATAGAAAAATAATGCCATGAAAGCATGCATATTATTTCAGACATGACTTATAAATTAATATCTAAACAAATAGATAAGTGAATAGAACCCatcaaagtattttttatttttataaaataggTCAATGTGTGTCTAAGCTCTAACTGAGGTCAATGCTCTCCCTGACTGTATTCTGGATAAATGCCTTGGTCAGGTCCTAGAGTTTGTACTGTATCCTAatgactattttttatttatttttttgtacctGGTTTTATTGAGCATTATCATGTTTTCATtcgtatattttttttttaaagaattaaagTACTTTATCCAGTCCTTGTAGATAGAAGTAAAAGTCCTATAAAATATGCAAACCTATGTACAGAGGAAAACggagcaaaaaaagaaacaatttacagtatattcatcggtttatgtatatatttatatatatatatttatattcaaacTTCTGCTctgtttcttgttgtttttgaaCCACAATACTTTGTTTTACTTTTCTTATGTAAACTTGCAGCTTCAAGTTGGAGCAAATGAAGAAGAGGTGCTTGGCATTCTAGTTCCCGTGGTCGTTCTGCTTCCCCTCCCTCATTTCACTCGACATTAAAACATGGGCTAGGTGAAAGACATGAGTGATTGCTCAAACAAACcgttaaaaaaaagcacaggCCGCATCAACACCTTTTTCAATTTTCTCAGAGCAGCGAGGGGCAGTCGAAGAGGGCACACAGTGTGGCGATCAGGGACACCAGACATGACATTTAGCTTCAGATGTTATTGTTAGCTCAAAGGCAGCTCAGGTGGATGTACCAGACGTTTTTGTACCTAACCAACCACGGATACTGTCAGAGCAAAAAAATGATCATGATGGTCATCTGGTTTGCACTGTACGCCACAGTCAGGCCATCGTTATGTGGCACATAGAAAGAGTGGCGTCCTGGGATGTGTGGTGGCGTCTTTTAGCCTCGCAAGATTTGGAAGGTAAATGTTAAATTATTCAATCTGCTAAAAAGGTTAGACACAGACACTAGGGAAATGGCATAATTAGCAGTGTATAGGAAAAACTAGTAACATCACCCAACAGGAAGCATTGTCTTCCAAAGTGTCATATAGCCTTataaatattcatatatataaatattcatTGAGTAATCTTCACCCGCTGAATATGTGTTGAATGCAGGGTCCAATAAATCCAAGTCTGTTGACCTTTTGCAGGTATATAGTAGGTGTCCATACCATTTTTGTAGACTATTATGAGAAACTGTATGCTAAAGCAATATGAAACCAGCCTCAGTGATACAGCAGTTGTGATGGGTAAATGGCTTTTCACTCTTATTGCTTCATTTTACAGTTTCATTATGCTTTTATGTGTATATTTGATTGTATGAGGGCATATAACATAAGGCAATATAACATCTTCTAAAGGATATGCTTCATGTCAAGTATTACCAGCAGAGATCCACACAGTAACTGCTGGATGGGGAAAGTACATAAAACCTCCCTTATTCTGTTCAGTGGGAAGCCAGCTCTCTAATTTTAACATATTCATCAATATTACATCACCTTCATAACCATTTAAACCTAATGGCAGGTCCAATAAGCTCAACCACTTCTCGTATTAAGCCACGTCATGTCAGTCGCCACCATGAACTTTACCCTAGTTTTGACTCCAACCAGTGGAACGTAGTCACAGGTGCCCTGCACACAGCTTTGATAGTTAGTACCTGTGCTAACAGGTTACCTAATGCCCGCTTTTATCTGAAGTGTAATCGCATGAGTCTAAATTAGTTCTAAATGCATTCTGTTTGTCAAAGACATTGATGGACCAACAGTGGTCTGATGTTTTGTTATATTGGACATGCACTGAAGCTCTCTATGTGGCTGAGAAATGATATGGATCTGGCTGTAGTTTTGACATCATAATAGCGTGTTGGCTGCttgcagcagtgtgtgtttaattattattttttgtctttgttttctgaGAGCACAGTGCTTGATGGCAGATTCTGCAGGTGACAAGGCACACCTTGACATGGTGACAGCCCATACGCTACATGCACTTTACTGAATGCAAAAGAGAGCAAGGGTTGTGAGACATATTCATTTTGGTTCAAGTTTCAAAGAgaagtttgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagtaagcTCAAAAGATATGTTTGGAATAGAGTCGAAGATAATTGTCCTTTTCCTCTAAAATCATTTAGCCTGATTCTCTTAAAGCCTGCTACTGAGATGTGGCTTTTTGCATTTTCAGATAATATTTACACCATATGTGTTTTCTCACACATGTATCTTTTAGCAATATATTGTGTGTCAGCATATAGGTAATCAGAGATAGGAATGCCTGCAGTTTTGGGAGCTGCCAGATTTGCGATTCTTCCCAAGCAGAGCAATGTTTCAAACTCCAGCTAAAATCTACAAAAAATTACAGCTCAACATAGTCAGAAGCCGTtctatatacagacacacatataaaatatgtgcatataaatacatatatttgtttgtgattAATATCTATTTatccatatatactgtatatatgaatACATTTGCTTGAATGCttgttatacatatatatgtactgCAAATATAAACAAGTTCATATATTTCAAACGTTTCTGATGTTATTCTATCTATGAGGTTAGGATGTCAAGTTAAAAAAGATAAGGCTGTGATACGGAGCAGCCCCTCCCATGCACTCGCCATCCCTCCCAAGACAAaatgagaagagaaaaaataaacattttgagTAATTGTAAACTAGCGAAGTGAGAGACCCCATTTGGTCATCTGAAATAGTTTTGCCTGTATTCAAAAAGCACATCagcaatatatatgtatatatacatgtgttGTATATATTCGAAATGTACACTTCCTTTAAGTGCAACTCCTCAACCAGTTAACACTGACTGAAAGAGATGCAGTGGTCCGAGTATATTAGAGCTACAAGTCCTCagcaataaaaatgtttggtCTTTTGGTCCCTAAAACAACTAAGGAATGACAGGTAAGACTCCCTGGAGACCGTTGCTATGGCTCTCCTTGGCAACGGTATCCCCTGGAAACGGACAGGCACTCCAAGCTAAAGATGGCCATCCCAAATCGAAGCCAATTTGTGTCCTGAAAATATCACATTCCCTACTTTAGTTCTCTTTCCGAGAATTTCTTGTCCCTTTTTGTTTCAAGTCTTATAAATTGGTCTTCAAAAGTCAATTGCCCCAAACTCAAACCGTCTTACAGAAAGATTTCCTACGGCAATCTTCTATtcagtttttaaaaagttttgttCTTGTTGGACTTTTGACATCCGTATTCCCTTTAAGAGTTCAGTGGGGTTGGTCATTGTAAGTAGGTATTGATAGagtttcttttactttttttcccctcattgTTCAAGTAAAAGTTTTTGTGGTCCAGAAAAGGTAGCTGTTATTCAAGCAGGGTTTTGTAGGGAAGgaggtgtgtatatgtgtgcagaAGAAAAAAGGTCCTGGGGCTAACCAGGCTGGTACAAATTCTCTCTGAGTTCCAAAGTTTTAGTACATCCAAAAAGAGGTGTCCTTGACTCTGTCATCGCACGCTTTCTCCTCGGTTTCTGAAGCAGCCTCTGTGGTCAAGATGCTGAGTTTGCACTCAGTGGCGGGTAGCAAGAAGTCAACATATGATTCAGCTCAACAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50098 lncRNA upstream 27096 10526699 ~ 10526936 (+) True G37337
TU49950 lncRNA upstream 100301 10453485 ~ 10453731 (+) True G37238
TU49915 lncRNA upstream 119330 10402258 ~ 10434702 (+) False G37215
TU49917 lncRNA upstream 119330 10402258 ~ 10434702 (+) True G37215
TU49907 lncRNA upstream 157875 10387912 ~ 10396157 (+) False glrx
TU50132 lncRNA downstream 101860 10660866 ~ 10661324 (+) True G37363
TU50136 lncRNA downstream 237973 10796979 ~ 10797424 (+) True G37367
TU50139 lncRNA downstream 351291 10910297 ~ 10915799 (+) True G37370
TU50148 lncRNA downstream 369471 10928477 ~ 10929384 (+) True LOC120557560
XR_005638986.1 lncRNA downstream 369498 10928504 ~ 10929387 (+) False LOC120557560
XM_039797459.1 mRNA upstream 651 10536453 ~ 10553381 (+) True kiaa1328
XM_039797461.1 mRNA upstream 21945 10528380 ~ 10532087 (+) False aqp7
XM_039797460.1 mRNA upstream 21945 10528383 ~ 10532087 (+) True aqp7
XM_039798049.1 mRNA upstream 51600 10499573 ~ 10502432 (+) True mlnl
XM_039798041.1 mRNA upstream 63982 10469385 ~ 10490050 (+) False ubap2a
XM_039798630.1 mRNA downstream 385182 10944188 ~ 10966216 (+) True dnai1.2
XM_039798628.1 mRNA downstream 385182 10944188 ~ 10965556 (+) False dnai1.2
XM_039796291.1 mRNA downstream 469789 11028795 ~ 11050816 (+) True LOC120556651
XM_039798012.1 mRNA downstream 492104 11051110 ~ 11053203 (+) True LOC120557557
XM_039798353.1 mRNA downstream 495184 11054190 ~ 11098050 (+) False cita
TU49895 other upstream 244036 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 1731301 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 1731724 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 1737635 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 1746344 8807616 ~ 8807688 (+) True trnar-acg_13
TU50184 other downstream 438224 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 793072 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 831733 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 1221172 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1694060 12253066 ~ 12254974 (+) True G37714

Expression Profile