RNA id: XM_039797462.1


Basic Information

Item Value
RNA id XM_039797462.1
length 2043
RNA type mRNA
GC content 0.43
exon number 7
gene id tpgs2
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10532526 ~ 10536353 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtgtgttacCAGCTAAGTTATTTGGAGAGAGGTGACGTTACATGGCAAATAGCTGCAGGGGATACTTTTAGGGGTTTCTGCAAATTTGTGAAGACGATCTTCCAAATGGAAGAGACAAAAGAAAGCTTGATATTTAAAGGTGTTGCTGAGAGACTGACGCTTGGCATTACTCGAATACTCGAGAACATGCCTGGTGTGGTCGATGTGCGTTTTGTAGAGAGGGAGCCTGCAGAGAAGAGGAGCCTGCTGTCATGGGAACAGAAAAACACTTGTATTTTGCCAGAGGACCTGCGAGATTTCTATCTGACAACGGATGGATTTACACTAACCTGGAGCGTTAAACTAGACAGTGAGTGTGTTCCCCTAGGATTGATGATGATTAACAGCGTGGCCAGGCTGTGCCCACTCCTCCAACCAGTATCATTATTCTCTCTACCCAATGCACCATCACTGGCTGACCTGGACTGGGAGGAGAACAGCACAGAAAGTGGGACAGGGCATTCTCCCGCTGCACCCCACTTTGATTCCCGTTGTCGCATCTTCGAGCTGGATTCCTGTGGTGGGAATGGCAAAGTGTGTCTAGTCTACAAAAACTGCACTCcagGTGTGGTAGCCCAGCAGAGTGAAATTTGGTTCCTTGACCGCTCGCTGGGTTGGCATTTACTGACAGCAACCTTCACCTCCTACTATCACCGTATGATCGTATGACCTATCATTTGGCACAACCcctacccccccaccccccacccccccccccccccccccccaCAGTGGGCATCGCTGTACCAGCCACTGATTTTCAGCAGTGAACTCAGCTTGGCTGATCCTGCTGGAGATTCCCATCTCAACAAACTGGATCCTACAAAGGCCTTCAAAGGCAAAGCCAAGATACCCATCCCCAAGAAGAAGCAGTCCACACAGTGCAGCTTAGGGAGCACTGCAAAGAGCCAAGGCAGCACAGGAAGACACAGTGGGGGAAAGCGGTGAGAATGTTTCCACCCAAGGAAACATTTCAACCAACTTTACTGTCTACACAACCAACATGGCTTAGAGCAGCTGTCAATTCCATCATTGGCTGGATTAGAGCATATTGTATGAAACTAAGTTTGAAATGCTGCATGTCTAAATAGATTCATAGCCATTGTTTTCCTCAGCTCAACACAGGGATCAAATGGTAACCAGCTGTTGGAGGCAACATGGCATGTAAAAAGGTGCTTTTTAACCTCGTTTATGTGTCAGAGGTTTCACGCAGCAAGAGCAATTGCCGTAACTGTAAAATGACATTATGTTGGCCTGTCATACATTTCAAAACACAAGAAACATCATGCTAATCATCATTTTTTGTTTACCGTTCACTACTCAAGTGTTAGTGGTGGAGAAATGAGGCTTTCTGAAACACTGACGCTTTCCAGCAAACAGAATCACCAATAGATTCATTATTCAAAGCCTCATATAACAGTGTTTTAACTAGTGACACCTAGTGGTAAAAATAACTAAAAGCATCCAATTCATAAAATATGATTATGTGCTTCTGACGCATGACAAATAATCCTGACATAGTAAAAAATTGAACCACTGCTGTAACCAATGAGTACACAGGATGTATTTGTAGTTGTTATCACTAGGCTTGTTTTGCTGTTGTAAATATTAAAATTCTAATGTATCatacaacaataatataatgtatacaatttgAAAAGAAGTGTGAAAATGTCTAAATAACACGCTTATGTGACTAAAACTGAAGGAAACTGGAAGAATGAAAATAATACTGTCGGTTTTAGTTGGACACTTTGAAACTCAGTGATGAACAAATGATCACAGAAAGAAATTGAAAACGATTGACACTGAAAATGTTTGAGCCAATACTGAGCATCAGTGGAAAGTGCTGTATCTGACACCTCCAGAGCTTCAGTTTCAAACATTCCATGACTTCAGAGTGCAATCAAATCTGAACCTTGAAATGTAACCTGTTACATTATCAAAGACTGAAAATAACCATCAAGTTGGGCTTCAGTGATCCAAGTTTCTCACTGGCCATT

Function

GO: NA

KEGG:

id description
K16605 TPGS2; tubulin polyglutamylase complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50074 lncRNA downstream 42474 10488800 ~ 10490052 (-) True G37321
TU50051 lncRNA downstream 76106 10453961 ~ 10456420 (-) True G37305
TU50031 lncRNA downstream 136271 10387917 ~ 10396255 (-) False rhobtb3
TU50017 lncRNA downstream 221372 10310109 ~ 10311154 (-) True G37276
TU49974 lncRNA downstream 230015 10293098 ~ 10302511 (-) True G37245
TU50126 lncRNA upstream 15943 10552293 ~ 10553381 (-) True G37361
TU50133 lncRNA upstream 124436 10660786 ~ 10661268 (-) True G37364
TU50216 lncRNA upstream 430207 10966557 ~ 10974888 (-) True G37418
TU50220 lncRNA upstream 446720 10983070 ~ 10988818 (-) True LOC120557925
TU50224 lncRNA upstream 488785 11025135 ~ 11147436 (-) True G37424
XM_039798048.1 mRNA downstream 11823 10501666 ~ 10520703 (-) True zgc:64106
XM_039798047.1 mRNA downstream 35278 10491316 ~ 10497248 (-) True nop56
XM_039798074.1 mRNA downstream 90457 10434200 ~ 10442069 (-) True ube2r2
XM_039798073.1 mRNA downstream 90458 10434200 ~ 10442068 (-) False ube2r2
XM_039799092.1 mRNA downstream 107739 10421844 ~ 10424787 (-) False rfesd
XM_039798410.1 mRNA upstream 17676 10554026 ~ 10639135 (-) False celf4
XM_039798408.1 mRNA upstream 17676 10554026 ~ 10639135 (-) False celf4
XM_039798401.1 mRNA upstream 17676 10554026 ~ 10639135 (-) False celf4
XM_039798397.1 mRNA upstream 17676 10554026 ~ 10639135 (-) False celf4
XM_039798411.1 mRNA upstream 17676 10554026 ~ 10639135 (-) False celf4
XR_005639079.1 other downstream 38204 10494203 ~ 10494322 (-) True LOC120558250
XR_005639075.1 other downstream 40169 10492290 ~ 10492357 (-) True LOC120558246
XR_005638890.1 other downstream 526353 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 1136956 9394739 ~ 9395570 (-) True G37045
XR_005639052.1 other downstream 1500035 8907782 ~ 9032491 (-) False LOC120558079
TU50209 other upstream 396059 10932409 ~ 10943628 (-) False fam219aa
TU50210 other upstream 396059 10932409 ~ 10943628 (-) False fam219aa
TU50233 other upstream 514949 11051299 ~ 11053085 (-) True G37432
TU50355 other upstream 804408 11340758 ~ 11343123 (-) True LOC120557334
TU50558 other upstream 1379539 11915889 ~ 11924426 (-) False dlgap4b

Expression Profile