RNA id: XR_005638986.1


Basic Information

Item Value
RNA id XR_005638986.1
length 523
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id LOC120557560
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10928477 ~ 10929387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCAGCACCACGGAGGCTACACTCAGGTCTCTCAGCAACATGATGTCACGTCCTGCCTGAGTTACGTAATGGTCTCAATCTATGCGGGAAGGTTGATGTTACAGTAAGAGACTACCATATTCTCAACCAACCTGGACATCCATAAGGAGGCTCCCACAGCTCCCACAGTTTACAATAATGTATTACCCATTAAGTCAGCTATGTTCTACTACTGGCACCATTTTGGCCATGGAAATGTCCCTCACCTGTCTCCCAGCGCTCCTGTCTCATGAGCCTTCTTACTACGTCTTCGTCAACTTCAGTGCTACTGCTTGCAGCGTGGACACAAACTAGCTCCTGGGAATCAGGGCGTCTTCTGTAGGTACAGCAGTTTGAAGCCGTCTGAAGAGCTGGTAGACAGGAGCACTTGAGAACTAACTGAGCCTGCATTGGAGACTTCACCCCTTAATCAGCCTGTCTGAAATATGTAAGACATTGTTTATCGcaaaaaaatgtacaattaaaAACTAACAGAAACACATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50139 lncRNA upstream 12705 10910297 ~ 10915799 (+) True G37370
TU50136 lncRNA upstream 131080 10796979 ~ 10797424 (+) True G37367
TU50132 lncRNA upstream 267180 10660866 ~ 10661324 (+) True G37363
TU50106 lncRNA upstream 369498 10554032 ~ 10559006 (+) True G37342
TU50098 lncRNA upstream 401568 10526699 ~ 10526936 (+) True G37337
TU50154 lncRNA downstream 7296 10936683 ~ 10943626 (+) True G37383
TU50183 lncRNA downstream 67843 10997230 ~ 11012909 (+) False G37397
TU50185 lncRNA downstream 67843 10997230 ~ 10998833 (+) True G37397
TU50343 lncRNA downstream 415353 11344740 ~ 11345059 (+) True G37521
TU50344 lncRNA downstream 417699 11347086 ~ 11347671 (+) True G37522
XM_039797459.1 mRNA upstream 375123 10536453 ~ 10553381 (+) True kiaa1328
XM_039797461.1 mRNA upstream 396417 10528380 ~ 10532087 (+) False aqp7
XM_039797460.1 mRNA upstream 396417 10528383 ~ 10532087 (+) True aqp7
XM_039798049.1 mRNA upstream 426072 10499573 ~ 10502432 (+) True mlnl
XM_039798042.1 mRNA upstream 438454 10469629 ~ 10490050 (+) True ubap2a
XM_039798630.1 mRNA downstream 14801 10944188 ~ 10966216 (+) True dnai1.2
XM_039798628.1 mRNA downstream 14801 10944188 ~ 10965556 (+) False dnai1.2
XM_039796291.1 mRNA downstream 99408 11028795 ~ 11050816 (+) True LOC120556651
XM_039798012.1 mRNA downstream 121723 11051110 ~ 11053203 (+) True LOC120557557
XM_039798353.1 mRNA downstream 124803 11054190 ~ 11098050 (+) False cita
TU49895 other upstream 618508 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2105773 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2106196 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 2112107 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 2120816 8807616 ~ 8807688 (+) True trnar-acg_13
TU50184 other downstream 67843 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 422691 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 461352 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 850791 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 1323679 12253066 ~ 12254974 (+) True G37714

Expression Profile