RNA id: TU50209



Basic Information


Item Value
RNA id TU50209
length 671
RNA type TUCP
GC content 0.52
exon number 6
gene id fam219aa
representative False

Chromosome Information


Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 10932235 ~ 10943639 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GTGGGGCGGTACTGCTGTTTTGCTGTCGAGTCACCTCTGTCAGGATGGAGGAAAACGAGCTGCTATCATGCTGAAAAACGAAGGATCCCGACAACCAAGCATCATCAACCGGGACAGTTAGGCATAAGTAACCGTTTATCTTGACTGCTGTATTGTTTTCTGTAACGCTTTTGCCAAAATGATGGAAGAAATCGACCGGTTCCAAGTACCTCCAGTCAACGGAGAGACACAGCCTTTGgaCCCAGCAGCATCCTCCACCTCAGAGACCGACCCTGACACCAAGGGAGAGACTATGGCCATGAACTACAAGCCCTCACCACTGCAAGTCCAAATAGAGAAACAGAGGGACCTTGCCAGGAAGGGATCAGTGAAGAATGGCACTGTGGGAAGTCCTGTCAACCAACAACCCAAGAAGAATGCCAGGACAAGGTTGGTGGTGCCAAACAAAGGCTACTCCTCTTTAGACCAGAACCCAGATGAGAAGCCCCTGGTAGCACTGGACACTGACAGTGATGATGACTTCGACATGTCCAGATACTCCTCATCAGGATACTCCTCAGCCGAGCAGATCAACCAGGACCTGAACATCCAGCTCCTGAAGGATGGGTACCGGCTCGATGAGATCCCGGATGACGAGGACCTGGATCTGATCCCCCAAAGCAGTCAACCCC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU50133 lncRNA downstream 271141 10660786 ~ 10661268 (-) True G37364
TU50126 lncRNA downstream 379028 10552293 ~ 10553381 (-) True G37361
TU50074 lncRNA downstream 442357 10488800 ~ 10490052 (-) True G37321
TU50051 lncRNA downstream 475989 10453961 ~ 10456420 (-) True G37305
TU50031 lncRNA downstream 536154 10387917 ~ 10396255 (-) False rhobtb3
TU50216 lncRNA upstream 22929 10966557 ~ 10974888 (-) True G37418
TU50220 lncRNA upstream 39442 10983070 ~ 10988818 (-) True LOC120557925
TU50224 lncRNA upstream 81507 11025135 ~ 11147436 (-) True G37424
TU50297 lncRNA upstream 204285 11147913 ~ 11154364 (-) True G37482
TU50300 lncRNA upstream 211943 11155571 ~ 11156612 (-) True G37483
XM_039798033.1 mRNA downstream 3424 10922393 ~ 10928985 (-) True zgc:109965
XM_039798594.1 mRNA downstream 10555 10919026 ~ 10921854 (-) False LOC120557901
XM_039798593.1 mRNA downstream 10555 10919026 ~ 10921854 (-) True LOC120557901
XM_039798592.1 mRNA downstream 13417 10912657 ~ 10918992 (-) True myorg
XM_039798410.1 mRNA downstream 293274 10554026 ~ 10639135 (-) False celf4
XM_039798631.1 mRNA upstream 41946 10985574 ~ 10988719 (-) False LOC120557925
XM_039798632.1 mRNA upstream 41946 10985574 ~ 10988719 (-) False LOC120557925
XM_039797363.1 mRNA upstream 46831 10990459 ~ 11014552 (-) False LOC120557231
XM_039797361.1 mRNA upstream 46831 10990459 ~ 11014552 (-) True LOC120557231
XM_039797364.1 mRNA upstream 46831 10990459 ~ 11014550 (-) False LOC120557231
TU50114 other downstream 396056 10534954 ~ 10536353 (-) False tpgs2
XR_005639079.1 other downstream 438087 10494203 ~ 10494322 (-) True LOC120558250
XR_005639075.1 other downstream 440052 10492290 ~ 10492357 (-) True LOC120558246
XR_005638890.1 other downstream 926236 9998997 ~ 10006173 (-) False LOC120556768
TU49655 other downstream 1536839 9394739 ~ 9395570 (-) True G37045
TU50233 other upstream 107671 11051299 ~ 11053085 (-) True G37432
TU50355 other upstream 397130 11340758 ~ 11343123 (-) True LOC120557334
TU50558 other upstream 972261 11915889 ~ 11924426 (-) False dlgap4b
TU50740 other upstream 1179817 12123445 ~ 12124452 (-) True G37799
TU50753 other upstream 1272575 12216203 ~ 12217190 (-) True G37805

Expression Profile