RNA id: TU50441


Basic Information

Item Value
RNA id TU50441
length 533
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G37606
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11861473 ~ 11862970 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGTCTCCAATGTCCTCGTACAGAACTTGCAAACATTTGTGAGGCTTGGTGATGTTGGCTTCAGTATCAGGTTGCCAAGTTGGGAATGTTGATGTGTTCTCCAATGGTGTAGGTGAAATACTGCCATTGTATTGAGCAAACCTAATCACAGCAGTCACTGTGGCTAGCATGGTGTCGGGCGCGACTCAGTAGACTCCGATTCAAGGGAACAGCTGATGTAAAATATTTGACAAAGAATCTGTCTTCAGCACATGCTTTACTCGCTGTCATACACGCTGTAATCGATCAATAAACTGATCGCCGATACGGGACATGGCTGTGGATAGTTTCGTACAGTTTCCTTAACAAATTTTCCCAGTGAGGTCAGCTGACACTCACCAAACAAGCAGAGTAAGTCTCGCGAGATGACATTGTGTTTTTCTCGAAGAGGCGGGCAGCTTTGTTTTTATCAGAGACACTACAGGTAAATAGggtcagcattttaactaaTAGATATCATGAAACTTTCCTATAGTTGATTACAGACCATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50427 lncRNA upstream 3776 11775341 ~ 11857697 (+) True G37595
TU50419 lncRNA upstream 185445 11659300 ~ 11676028 (+) True G37588
TU50397 lncRNA upstream 346385 11514762 ~ 11515088 (+) True G37567
TU50391 lncRNA upstream 438574 11422242 ~ 11422899 (+) True G37561
TU50390 lncRNA upstream 439751 11421523 ~ 11421722 (+) True G37560
XR_005638970.1 lncRNA downstream 161360 12024330 ~ 12024737 (+) True LOC120557465
TU50577 lncRNA downstream 246334 12109304 ~ 12110788 (+) True G37691
XR_005638918.1 lncRNA downstream 289795 12152765 ~ 12165645 (+) True LOC120556983
TU50620 lncRNA downstream 437280 12300250 ~ 12300495 (+) True G37718
TU50642 lncRNA downstream 520486 12383456 ~ 12383735 (+) True G37725
XM_039797570.1 mRNA upstream 467075 11385184 ~ 11394398 (+) True LOC120557336
XM_039797569.1 mRNA upstream 479293 11376535 ~ 11382180 (+) True LOC120557335
XM_039797567.1 mRNA upstream 485661 11361406 ~ 11375812 (+) True LOC120557333
XM_039796527.1 mRNA upstream 528827 11330556 ~ 11332646 (+) True msx1a
XM_039799019.1 mRNA upstream 595403 11263510 ~ 11266070 (+) True LOC120558115
XM_039797802.1 mRNA downstream 30620 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA downstream 37806 11900776 ~ 11905754 (+) True myl9b
XM_039798726.1 mRNA downstream 218135 12081105 ~ 12111841 (+) True LOC120557971
XM_039798915.1 mRNA downstream 251038 12114008 ~ 12127710 (+) True tgm2b
XM_039798481.1 mRNA downstream 411791 12274761 ~ 12278624 (+) False LOC120557851
TU50430 other upstream 56079 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 467139 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 509086 11352078 ~ 11352387 (+) True G37525
TU50184 other upstream 863336 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 1551477 10305187 ~ 10309996 (+) True G37197
TU50615 other downstream 390096 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 411790 12274760 ~ 12278624 (+) True LOC120557851
TU50647 other downstream 523201 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 853190 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 872897 12735867 ~ 12741048 (+) False b3galt6

Expression Profile