RNA id: TU50675


Basic Information

Item Value
RNA id TU50675
length 497
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G37742
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12450052 ~ 12450548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTACAAAACCAGCCTACAAGGACCTATTAAACTCAGTAGCTAATTGACAATTTTTTATCTTGTTCAATCCTCGTATAagtagtagtctatatccttcgacgttccacttctgggattgcttcGGTACCGCGGGAAATTTCAccagatgcatgtctttttgccgatttccgtttccttccgctttattttttgttggaattttaaactccggtggatttatgaggactatggttaactgctcctcagatctctgcagggtaaattgagacagctagctagactatctgtccaatctgagttttctcttgcacaacTATTTTTGCAGCGGCTATGTCtggcacttagcaccgcccaagacgattgtgattggtttaaagaaaagccaataaaccagagcatgtttctctcccatcccgcaatgctgtgtggactagccagaccctcctccgctccgcagcgtgtggatggtctggcaaagcaagactatatAGGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50646 lncRNA upstream 64406 12385390 ~ 12385646 (+) True G37729
TU50645 lncRNA upstream 64836 12384991 ~ 12385216 (+) True G37728
TU50642 lncRNA upstream 66317 12383456 ~ 12383735 (+) True G37725
TU50620 lncRNA upstream 149557 12300250 ~ 12300495 (+) True G37718
XR_005638918.1 lncRNA upstream 284407 12152765 ~ 12165645 (+) True LOC120556983
TU50696 lncRNA downstream 134109 12584657 ~ 12585811 (+) True G37761
TU50703 lncRNA downstream 148892 12599440 ~ 12599671 (+) True G37768
TU50705 lncRNA downstream 153250 12603798 ~ 12606662 (+) True G37769
TU50715 lncRNA downstream 211223 12661771 ~ 12661985 (+) True G37778
TU50722 lncRNA downstream 230580 12681128 ~ 12682749 (+) True G37783
XM_039798006.1 mRNA upstream 10677 12394589 ~ 12439375 (+) False LOC120557555
XM_039798009.1 mRNA upstream 10677 12400906 ~ 12439375 (+) True LOC120557555
XM_039798007.1 mRNA upstream 10677 12400906 ~ 12439375 (+) False LOC120557555
XM_039798010.1 mRNA upstream 13326 12394585 ~ 12436726 (+) False LOC120557555
XM_039798500.1 mRNA upstream 79406 12339555 ~ 12370646 (+) True LOC120557854
XM_039798725.1 mRNA downstream 38149 12488697 ~ 12496235 (+) True phf13
XM_039797279.1 mRNA downstream 57465 12508013 ~ 12560180 (+) True LOC120557182
XM_039797281.1 mRNA downstream 57465 12508013 ~ 12560180 (+) False LOC120557182
XM_039797276.1 mRNA downstream 57465 12508013 ~ 12560180 (+) False LOC120557182
XM_039797282.1 mRNA downstream 57465 12508013 ~ 12560180 (+) False LOC120557182
TU50647 other upstream 62877 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 171428 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 195078 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 644658 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1055718 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 265612 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 285319 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 374981 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 741230 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 742699 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile