RNA id: TU50696


Basic Information

Item Value
RNA id TU50696
length 1155
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G37761
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12584657 ~ 12585811 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTAATGTACAACAGaaatacaatacatttaaaaggcTCATATTTATGATTTCTGTCTGACAgccagactgaatgaatgaggaaaaacGACTCTAGCCAAGAGAAACACTGAACACAATTCAAGATATACTTGTAAACAACTTTATTAAAAAGCTGCTCATCTTTGGTTACCAGAACAATTTCCTTCACGTCCCAAACAGTAACACTTCATTCACAGACGATTAAGCAATATTACACGAGAGGGTTTGATTCAACGTCATTATTGGCACAAGCGCCTCGGTCCTAGCCGCATCACCGAAGTGCTAATAATATAACCCTCTCGTGTAATACTGCGATTACACAAAAACggttaccaacaaaataaaagttataatcaaactgtattcatattgtggggaAATTCActctcaaaataataataataaaagaggtGATTTctagtccctccctgtttagtcagccagtcAACTTAAGGTAACGATAGGTTTGTAGAGAtcgtggcacacacacacaagaataaTTTACACAGCATCCCTTATACCACTGAATTCATATACATATTAGGGGTGTGACGATCCAATATTAAGATCGGATATCGGCTgcaatattgacaaaatagctggatcggggatcggaaaaaattaacagatccacgggccgatccagttttttgttgttgtttttttcttccgtCGCAGCACATCCTACGTCATTCCTCAGCAGCACCTGTGTCGCATGCTGGAAGGGTTAAGTTAAccgttaaagggatacgccaccgtttgttgaaatagggcttatcacgatCCCCCCTagatgtagataggtgggccaacgcattttttgtgcatgcattgttttagtccggtgcaacactggcagcgccgccgctagttagcttagagtagtgaatggaatcctatgttgccggttagcatgttgtgagtaaaagccaacaaaaagacaaaaaaacaattacttgcactgagacaaaaaatgcgttggcccacctatctacagccagggtagatcGTGATAAGCACTATTAGAACATAcggtggcatattcctttaagCAACATGGAGCGAGCCAAAGAGTGcttctacattttatttattttaagaagtttgattacattctattttcgatttgaatgc

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50675 lncRNA upstream 134109 12450052 ~ 12450548 (+) True G37742
TU50646 lncRNA upstream 199011 12385390 ~ 12385646 (+) True G37729
TU50645 lncRNA upstream 199441 12384991 ~ 12385216 (+) True G37728
TU50642 lncRNA upstream 200922 12383456 ~ 12383735 (+) True G37725
TU50620 lncRNA upstream 284162 12300250 ~ 12300495 (+) True G37718
TU50703 lncRNA downstream 13629 12599440 ~ 12599671 (+) True G37768
TU50705 lncRNA downstream 17987 12603798 ~ 12606662 (+) True G37769
TU50715 lncRNA downstream 75960 12661771 ~ 12661985 (+) True G37778
TU50722 lncRNA downstream 95317 12681128 ~ 12682749 (+) True G37783
TU50860 lncRNA downstream 111414 12697225 ~ 12700679 (+) True G37882
XM_039797923.1 mRNA upstream 2253 12561829 ~ 12582404 (+) True hipk1b
XM_039797925.1 mRNA upstream 2253 12561829 ~ 12582404 (+) False hipk1b
XM_039797926.1 mRNA upstream 2253 12561829 ~ 12582404 (+) False hipk1b
XM_039797927.1 mRNA upstream 2253 12561829 ~ 12582404 (+) False hipk1b
XM_039797924.1 mRNA upstream 2253 12565133 ~ 12582404 (+) False hipk1b
XM_039796315.1 mRNA downstream 74702 12660513 ~ 12674959 (+) True pusl1
XM_039798509.1 mRNA downstream 125674 12711485 ~ 12715490 (+) True LOC120557860
XM_039797395.1 mRNA downstream 130367 12716178 ~ 12719493 (+) True cdab
XM_039797394.1 mRNA downstream 148715 12734526 ~ 12738534 (+) False b3galt6
XM_039797390.1 mRNA downstream 150057 12735868 ~ 12738534 (+) True b3galt6
TU50647 other upstream 197482 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 306033 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 329683 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 779263 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1190323 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 130349 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 150056 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 239718 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 605967 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 607436 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile