RNA id: XM_039797395.1


Basic Information

Item Value
RNA id XM_039797395.1
length 790
RNA type mRNA
GC content 0.44
exon number 4
gene id cdab
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12716160 ~ 12719493 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCTGATCTACAATAGACTCATACACTGTCTCAAAAACAACCTTACAAACCCCAAGAGCAATCATGGACCAAGCCAAGTTCAGCGAGGGTGTGATGCATATTAAGGACCATGGCTCCACACACTTGTCCCAGGAAACAGTCAAAAAGCTGATCCACCAGGCTCAGGAGGCAAAGCAGCAAGCCTACTGCCCTTACAGCAAATTCAGAGTGGGAGCTGCTCTCCTGACTAGACCAGACAACTATTGGTTTACAGGTTGCAATGTGGAGAATGCATGTTACAACCTGGGTGTGTGTGCTGAAAGGAATGCTATCTCAAAGGCAGTTTCTGAAGGCTACAGAAGTTTCAAGGCAATTGCAATTGCCAGTGACATGAATGACCAGTTCATCTCCCCGTGTGGTGGTTGCAGACAGTTCATAAGAGAGTTTGGATCAAACTGCGATGTGTACCTGTCTAAGCCCGACGGCTCATACCTGAAGAAGACGGTGGACGAGCTGCTGCCCGTCTCCTTTGGCCCTGAAGAACTGTCCGTAAAGAAAGTGTTTGACATTCCTAATGAGTACTGAGCCTGTATTGTAGTACAGAACACACACGTGTTGCTTATTTGAACTGCCAGTACATGTACCGTGTATAACATAATGCTGAAAACGTATTCATGTTTAGCAGCAGCTCTATTTATGGTAAATATTTCTTCTTGTGTTATCTGCAGATTTGATTTGTGTGATGTACTTAaatgtattgttattaatatacgCATCAAGCCAATTGCCAGACTATAAGCTGGAAAATTCA

Function

GO:

id name namespace
GO:0009972 cytidine deamination biological_process
GO:0008270 zinc ion binding molecular_function
GO:0004126 cytidine deaminase activity molecular_function

KEGG:

id description
K01489 cdd, CDA; cytidine deaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50860 lncRNA upstream 15499 12697225 ~ 12700679 (+) True G37882
TU50722 lncRNA upstream 33429 12681128 ~ 12682749 (+) True G37783
TU50715 lncRNA upstream 54193 12661771 ~ 12661985 (+) True G37778
TU50705 lncRNA upstream 109516 12603798 ~ 12606662 (+) True G37769
TU50703 lncRNA upstream 116507 12599440 ~ 12599671 (+) True G37768
TU50883 lncRNA downstream 29728 12749221 ~ 12752281 (+) False tmem167b
TU50970 lncRNA downstream 194577 12914070 ~ 12914413 (+) True G37966
TU50974 lncRNA downstream 343841 13063334 ~ 13064366 (+) True G37970
TU50982 lncRNA downstream 350678 13070171 ~ 13071870 (+) True G37978
TU50984 lncRNA downstream 352481 13071974 ~ 13072825 (+) True G37980
XM_039798509.1 mRNA upstream 688 12711485 ~ 12715490 (+) True LOC120557860
XM_039796315.1 mRNA upstream 41219 12660513 ~ 12674959 (+) True pusl1
XM_039797925.1 mRNA upstream 133774 12561829 ~ 12582404 (+) False hipk1b
XM_039797394.1 mRNA downstream 15033 12734526 ~ 12738534 (+) False b3galt6
XM_039797390.1 mRNA downstream 16375 12735868 ~ 12738534 (+) True b3galt6
XM_039797391.1 mRNA downstream 16375 12735868 ~ 12738534 (+) False b3galt6
XM_039797393.1 mRNA downstream 16968 12736461 ~ 12738534 (+) False b3galt6
XM_039797392.1 mRNA downstream 16968 12736461 ~ 12738534 (+) False b3galt6
TU50647 other upstream 329003 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 437554 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 461204 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 910784 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1321844 11390739 ~ 11394334 (+) False LOC120557336
XR_005638946.1 other downstream 16374 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 106036 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 472285 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 473754 13193247 ~ 13193320 (+) True LOC120558251
TU51031 other downstream 485991 13205484 ~ 13208258 (+) False spcs1

Expression Profile