RNA id: TU51049


Basic Information

Item Value
RNA id TU51049
length 1917
lncRNA type sense_over
GC content 0.40
exon number 4
gene id vamp3
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13296376 ~ 13303615 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATTAAGTGACGTGCTAtgcaaaatcttttttttgtgtgtaatctCACAGAAGGCTGATATCTACACTTCATTTTAATCGTTTCACCAGGTCAGCAGCCAGTCCAGAAGGTTCTGGTGCAGCGTCAGGCAACAGGCGCTTGCAGCAGACCCAGGCCCAGGTGGATGAGgtggtggATATCATGCGTGTTAATGTGGACAAAGTGCTGGAACGTGACCAGAAGCTGTCTGAACTGGATGACAGAGCCGACGCACTGCAGGCTGGAGCCTCCCAGTTCGAGACCAGTGCCGCTAAGCTGAAGAGGAAGTACTGGTGGAAGAACTGCAAGATGTGGGCCATCCTGATAGCTGTCATagtgatcatcatcatcatcattgttaTTTGGAATTACTCCTAAAACGGCAACAAGAGGAGGAGTGAAGAAAACGATGACGAAGAGGAGAGGAGCAACATACATAATTAATATCTCAAAGGAAGATGTCATGTGATTACTGCCTACTGTGCTTCACAACGTTTTTCTCCTGGCAGGGATCTTCATTCCTTGGCCTggtttgctctgtgtgtgtgggtgtgtgtgtgggggtgtctgAGTAAAGGATTGTCACAATACCAGAGTTTTACCCTGCATTACTACACCATACCTGTTATCTTTACACTTATTAGAATTCCATTGCACTTGccaaagaaaacagaaacatacaTAAAGAAACTGGTTGACAATTTAACTCGATCTCAACCAAAACCTATTTAAAAGTTTAAATGAATCCTcttacaatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcgcacatgtacatacatacatcaacCTCAGGACATGAAGTGAAGAATGTTGTTGTAAACTCTCCTCAATTTATAttgacttttttatgttttattaataGCCATTGATTTTGTGTGCCAGGCTAAAAGACGTGCCTTTGAGGATATGCTGTTCTGTGTTAGTTAACATAGTATTAGTAACCCTGCATATAATTGAAGAGATGCCCCTTtccaacacataacacatttgTACTTTTCAGATGCcaaaatttagatttttctcATTTAAAGGTTATTTGCTAATTCATTTCTCTGTGCAAAACATTTGAATTGAGATTGAATTAAGAGGAATTTCATTGGTCACCCGGCAACAAATGAGCTAACCAGTAACACACTGTTGAACCACCTGATCATACCTGTCATTGTCCATCTTCCTTTCAGGTTGGACAGTAGAAACTAATATAGACTTGTGTTTAGATAAGTGCCTTTATGTTAAGACCTATAGCCTTACAGCTACGTAAGACTAGAGAAACTGCTAAGAAGCTTACTACACTTAGTGCTACACTGGGTTAAAAGTGGCAAATTGTTTCAAGCAGGTGTTTTCAATGACGTGCTAGAAAGTTTGCCTTTTTGTGATCTATTCAAGCACAAGAAAATGTAGTATTAGACAGGTGCCTTTAATAGGTTTCTCCAATGGAGAACAGCCAAAATACAGCCAAGCCTTATTGGTCATATATACCAGCCAGTAAAAGTAGTGCCTTCTGAATGCTCCAACTGTCCAAACAAATACTATGCTGCTTGCTTATTCAGCTGAACTCATTAGCCTTTAATACACTCTTCTGTTTAGTCATACTGTCATTTTTTCCCACTTTCCCCACACATATTTTAGTGTTATTGCGCCTCTAACAATAGCTTTTTGTAATCTATTATATGTAGATCTAACCTTAAGGAGACTGTGTAtagtattttttgttttggagATCACTGCTGCTCAGCATCATGCGTTCTTGAGTGTAGAGAAAAACTTTGTTGGGCAATGACAGTGTTGTACACCGACACTGGATGATTGCATTCTGTTGCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51006 lncRNA upstream 179804 13115654 ~ 13116572 (+) True G38001
XR_005638901.1 lncRNA upstream 216489 13075419 ~ 13079887 (+) True LOC120556864
TU50984 lncRNA upstream 223551 13071974 ~ 13072825 (+) True G37980
TU50982 lncRNA upstream 224506 13070171 ~ 13071870 (+) True G37978
TU50974 lncRNA upstream 232010 13063334 ~ 13064366 (+) True G37970
TU51054 lncRNA downstream 2224 13305431 ~ 13312141 (+) False per3
TU51065 lncRNA downstream 16477 13319684 ~ 13372351 (+) False mdm4
TU51173 lncRNA downstream 153722 13456929 ~ 13488836 (+) False tfeb
XR_005638907.1 lncRNA downstream 472574 13775781 ~ 13777150 (+) True LOC120556887
TU51232 lncRNA downstream 608122 13911329 ~ 13989841 (+) True G38156
XM_039797962.1 mRNA upstream 32036 13219343 ~ 13264340 (+) False camk1b
XM_039797961.1 mRNA upstream 32036 13219344 ~ 13264340 (+) True camk1b
XM_039796891.1 mRNA upstream 88120 13205469 ~ 13208256 (+) True spcs1
XM_039796883.1 mRNA upstream 101475 13171393 ~ 13194901 (+) True gnl3
XM_039798418.1 mRNA upstream 235601 12925713 ~ 13060775 (+) True cpne5b
XM_039796569.1 mRNA downstream 2208 13305415 ~ 13329332 (+) True per3
XM_039797210.1 mRNA downstream 38693 13341900 ~ 13347042 (+) True psma5
XM_039797207.1 mRNA downstream 49861 13353068 ~ 13364340 (+) True LOC120557160
XM_039797208.1 mRNA downstream 50025 13353232 ~ 13364340 (+) False LOC120557160
XM_039797211.1 mRNA downstream 62317 13365524 ~ 13372372 (+) False mdm4
unassigned_transcript_200 other upstream 10065 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 88118 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 103056 13193247 ~ 13193320 (+) True LOC120558251
XR_005639082.1 other upstream 104465 13191778 ~ 13191911 (+) True LOC120558254
TU50929 other upstream 438963 12825529 ~ 12857413 (+) False kif21b
TU51060 other downstream 62347 13365554 ~ 13368289 (+) False mdm4
TU51174 other downstream 153722 13456929 ~ 13528319 (+) False tfeb
TU51331 other downstream 924008 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 1032182 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 1505145 14808352 ~ 14816436 (+) True G38517

Expression Profile