RNA id: TU51060


Basic Information

Item Value
RNA id TU51060
length 1766
RNA type TUCP
GC content 0.45
exon number 5
gene id mdm4
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13319684 ~ 13372372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATCTGTAGTTCAGCGATGCTAATTGTCAGCGGTTAGTTAGTGAGCTAGAGTTCAAAATCCCAAGATTtattagctagctatatgtaCATTTCCAAGATGTCGACTAGATGTTTTTAAGGCAGCAGAGCGTGTGGAAcaatgtagcagctgtgaagtAATGCCAACTCATCACGACTTTGTTCGTTTACTATGAGCTCCCTATCAGCCCAGCCTCTGGCATCAAGCTCATCATGCAGGACACTACCTGGAGAGGGAAATCAGGTACAACCAAAAGCCCCTCTCCTGCAGATTCTGCGTGTTGCCGGAGCTCAAGAAGAAGTCTTCACACTCAAAGAGGTGATGCACTACTTGGGTCAGTACATCATGGGGAAGCAACTGTATGACAAACAGAGGCAGCACATAGTCCACTGCCAGGATGACCCTTTGGGAGAGCTGCTGGAGGTTGACAGCTTCTCCGTCAAAAACCCGAGCCCGGTGTATGAAATGCTCAAGAAATACTTAGTTGTGCTTGGTTGTTCTGGTAAGTCTCACATTCGTTTCTCTTCGTTTTATTACGTGAAATGATGTTTGTCAAGGGGCACCATCAGTAACAAGCAatgtatgaatacattttgtgtAGTTTAGTACATTGTACATTGAAATTCAATTATGTCTTTTTCCTCTTCCCTTTTGTGATTGATGAATTCAATACTTCATTTGCATCTTTAACATATGTTTTGAAGTGAGGATCCCTGGGTATATGGTGATTATCTATACATATATTCTAATTCAGCTTTCCTTTTGCATACATTTTGAGTGCTTGTGATAGTTTGTGCATCTCCTGGGGATGCGGGGACCAGAAAAATACCATTTCCCAGCTGGTCCTGCAAAGCTACAGAAGGAGGCCTTAGTGAGAGAGTGTATTATGCTATAATTAAAGGGTGGGGGTGTCCTGTTTCTGTTACTGTGTCTCATCTGAAATGCAGACGCTGCAGAGAATCTTTCTGTGGGCCGTGAATGTGTAGAGGGCGGAGTGGAGGATCGCGGTCAGGTAAAACCGAAGCATGGTGCTAAGGAGAAACAGAGACCTCCAACCTTTCTCCCCTCACTACACACAACTCTAGTGAATACAAAGGGACATGACTGGCAGGCTAAGTGAAAAGCTgcttataaataatatattttgcCATAAGACATAACATGCAGTGATCACAGTGATGGATTGAGACCAGTAGGCCTTGGTGTAGCACCAAATCACTAATTCCTCATTTCCACTGCATAGTTCACTATGACTTAACTCACTTTTGATACCAAGGCCCTTTTCTCTATTTAGTTTTCCACTGCGGATATTACCCCCACAGTGTAGGCGGGATTCTTAGCTGATTGCTGTAGTGATAGAGTCGGATCAAGCCATACAATGCAGTGGAAATGCGGCGTTAGACTGTAAAGTAAGCTGCTGTCTGCTTGTGTGTAATGAGGAGGGGAGGTAAGGGCTGCTGTCTTCGTTGGTGTGCATTTGTACAGAGTGGCACCGTCTCTGTACAACCCCATCCTTGGTTTGGTCTGGTGGTATTTTCAGCACTCTGTTGCGATCCACCAGCACCACCCAGTGGATGGGGGGCAGAGtcaccctctctgtctgtctcagagTTCTCTTCTCTGCTCCGAAACTGGAGGTTTGCAGCTCCTGATCCAGCCACAGGCCTAACAGTAACCCTAAACCTCTTAACCCACCCCCGTGTTCCTACATCTTTCTTCCCGACTCCCTCCAAAATCCATCACCTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51054 lncRNA upstream 53413 13305431 ~ 13312141 (+) False per3
TU51049 lncRNA upstream 62347 13296376 ~ 13303207 (+) False vamp3
TU51006 lncRNA upstream 248982 13115654 ~ 13116572 (+) True G38001
XR_005638901.1 lncRNA upstream 285667 13075419 ~ 13079887 (+) True LOC120556864
TU50984 lncRNA upstream 292729 13071974 ~ 13072825 (+) True G37980
TU51173 lncRNA downstream 88640 13456929 ~ 13488836 (+) False tfeb
XR_005638907.1 lncRNA downstream 407492 13775781 ~ 13777150 (+) True LOC120556887
TU51232 lncRNA downstream 543040 13911329 ~ 13989841 (+) True G38156
TU51240 lncRNA downstream 623620 13991909 ~ 13992179 (+) True G38163
TU51241 lncRNA downstream 634673 14002962 ~ 14003187 (+) True G38164
XM_039797207.1 mRNA upstream 1214 13353068 ~ 13364340 (+) True LOC120557160
XM_039797208.1 mRNA upstream 1214 13353232 ~ 13364340 (+) False LOC120557160
XM_039797210.1 mRNA upstream 18512 13341900 ~ 13347042 (+) True psma5
XM_039796569.1 mRNA upstream 36222 13305415 ~ 13329332 (+) True per3
XM_039796323.1 mRNA upstream 61939 13296419 ~ 13303615 (+) True vamp3
XM_039797231.1 mRNA downstream 11831 13380120 ~ 13382642 (+) True myog
XM_039797232.1 mRNA downstream 78002 13446291 ~ 13456049 (+) True tmem183a
XM_039797233.1 mRNA downstream 78002 13446291 ~ 13456049 (+) False tmem183a
XM_039797235.1 mRNA downstream 88646 13456935 ~ 13502920 (+) True tfeb
XM_039797239.1 mRNA downstream 88646 13456935 ~ 13502920 (+) False tfeb
unassigned_transcript_200 other upstream 79243 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 157296 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 172234 13193247 ~ 13193320 (+) True LOC120558251
XR_005639082.1 other upstream 173643 13191778 ~ 13191911 (+) True LOC120558254
TU50929 other upstream 508141 12825529 ~ 12857413 (+) False kif21b
TU51174 other downstream 88640 13456929 ~ 13528319 (+) False tfeb
TU51331 other downstream 858926 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 967100 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 1440063 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 1496770 14865059 ~ 14874459 (+) True calcoco1b

Expression Profile