RNA id: TU51065


Basic Information

Item Value
RNA id TU51065
length 1905
lncRNA type read_through
GC content 0.36
exon number 3
gene id mdm4
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13319684 ~ 13372372 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcgtcaggcTCTGGGgaactcaacaacaacaaatatacaaCATACATTCGACCATACAGATGCATGCACTCTGGTACACACTCATAGACATTCACACAAAATGTGCACCTTACCGTTTAAACCTACACAGATATGTACACAAAGTATAGCACTTGGTGAAGCTTGCTCTTGGTTGCATGGTTTATTCTGCATCACACTGCTTCTCAAGTATTGTTTTGATGAAACCTCTGACTCGAGAATTTGTCAtaccaaatgtttgttttagtgCCACATTTAAATAAGGGATATACAAAGGCagaagtatttatttatttataaggaGATCACATGAGTGCACATTGTGAGCTATTTGATTTaatgaagacttttttttttcttttcaggctATGTGTGAATTTTCTCATGGTTTTTGCTATGCATTGAATGGTGCCATTTTAAACTGGTATTGCTTGCCTTCTGTTAGTTTTCTTTCCCCATAGATTCACGTTAGACATCATCTAGGCAAAAATGGAAAGATCATTGCAGGGAATTGTGGCTCTGAGATTTGAGTTATGAAGACAAGATTGAAGGAAGAACATGAAAGAGGGTAATAAAACCATGATTTTGTTGTCAACAGCTGCAGCTCCATGAAAGTATCCTCCTAagcttttctttaaaaaacaaaaaacaattactAGCATAATTGAATGTACTGTAAAATACAGATGTGGTGGCTTAAGTCCTGTTTCTCTCAACATAGTATTTTAAATGTAGAATTGAATTTAACTTGCTTGAGAATGCACAGCTGAAGTATTTACTGTAATTTTCTCTTGGGGTACTAATTTGATGTTAATGTGTATTCAGTACCGTATTTACAAGCCTCTGATGACAGTTATGCCTGCAGTAAGTTATGTTATATAACTGTTggttaatgtttaaatgttatcATTCAGAAAGGTTCCTTTACACACAAATTCTAATCAAACGATTtctgtatattttgtatttaatttatttatgattcagttttaattgtttaaaTGACCGCCACttctaatgaagcagaaaacAGTCTGCACTTGTTACAGAGCTCTAATGTGTACATTTTACGCAAAACTATTTGCTGAAAGGTATACAGAAAGTCTTTTAAGGAAGCAGGTGAAGTTACCACATGTACCCTCTGTGAAAATGACTGGAGTACATATTGGGAGTTAGAGGTTTGATTTCAGCGTTAACACTGCCACGTAATGACTCTGAACTTtaatttgtatattattatagattttattttgatgtCTCTGCATTATTTGAAGATTGTGTCGCTGGACCGGTGGGTGAGCGGTCTACAAATACAGTATGCTCTACAATCCTTACAAGTTAAATGTACAGTGACCGTAAGCATTAAACTCTTGGCTCTGCTTAGCGTAGAGGGAATACAATAGTTCCTTGATATGGCCTTTACTTGCGCTTAATCTTTCTGCCAGCAGGTGGGGAGAAGTCTCAATATTGTATCTGGTGCTCACATAAGCTGTACAGTACCAGTAATACCATGTATAGCATATATAGAGCATGCCTCCCGTCGTGACTAGAGCCAGCACTGAACTGGTGAGAGAGCTATATTAGTTATATGAAAAGCTATAAAAGATGAATGTCGCCTTTTGTATTTATAACCCATAATTGTGCATCGAGAGAAACAAACTTCCTCTAGATACAGACCTCATTAAAGTGGCTTAGTACATATTATACCAGTAATACTGGTTCACAATGACAGACTTGTTGCAATTGACATTAAGACTATAATTTGCCCAAACGTTGTACAGCTAATATAGTTGTTTGTTTTCTACCTGTCATGGAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51054 lncRNA upstream 7543 13305431 ~ 13312141 (+) False per3
TU51049 lncRNA upstream 16477 13296376 ~ 13303207 (+) False vamp3
TU51006 lncRNA upstream 203112 13115654 ~ 13116572 (+) True G38001
XR_005638901.1 lncRNA upstream 239797 13075419 ~ 13079887 (+) True LOC120556864
TU50984 lncRNA upstream 246859 13071974 ~ 13072825 (+) True G37980
TU51173 lncRNA downstream 84578 13456929 ~ 13488836 (+) False tfeb
XR_005638907.1 lncRNA downstream 403430 13775781 ~ 13777150 (+) True LOC120556887
TU51232 lncRNA downstream 538978 13911329 ~ 13989841 (+) True G38156
TU51240 lncRNA downstream 619558 13991909 ~ 13992179 (+) True G38163
TU51241 lncRNA downstream 630611 14002962 ~ 14003187 (+) True G38164
XM_039796323.1 mRNA upstream 16069 13296419 ~ 13303615 (+) True vamp3
XM_039797962.1 mRNA upstream 55344 13219343 ~ 13264340 (+) False camk1b
XM_039797961.1 mRNA upstream 55344 13219344 ~ 13264340 (+) True camk1b
XM_039796891.1 mRNA upstream 111428 13205469 ~ 13208256 (+) True spcs1
XM_039796883.1 mRNA upstream 124783 13171393 ~ 13194901 (+) True gnl3
XM_039797231.1 mRNA downstream 7769 13380120 ~ 13382642 (+) True myog
XM_039797232.1 mRNA downstream 73940 13446291 ~ 13456049 (+) True tmem183a
XM_039797233.1 mRNA downstream 73940 13446291 ~ 13456049 (+) False tmem183a
XM_039797235.1 mRNA downstream 84584 13456935 ~ 13502920 (+) True tfeb
XM_039797239.1 mRNA downstream 84584 13456935 ~ 13502920 (+) False tfeb
unassigned_transcript_200 other upstream 33373 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 111426 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 126364 13193247 ~ 13193320 (+) True LOC120558251
XR_005639082.1 other upstream 127773 13191778 ~ 13191911 (+) True LOC120558254
TU50929 other upstream 462271 12825529 ~ 12857413 (+) False kif21b
TU51174 other downstream 84578 13456929 ~ 13528319 (+) False tfeb
TU51331 other downstream 854864 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 963038 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 1436001 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 1492708 14865059 ~ 14874459 (+) True calcoco1b

Expression Profile