RNA id: TU51174


Basic Information

Item Value
RNA id TU51174
length 1715
RNA type TUCP
GC content 0.52
exon number 11
gene id tfeb
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13456929 ~ 13528319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaactcttaagagttgttttcattttgagCACGACTTCTTTTCCCGATAGTGCCTGGCAGGATTGGTATTATTAGAGCGCATGAGAGAAGTGGACACGCACTTTTCGTGGACCTGACTTCTTTACTGCGTTCTGTCTGACCTTCAGAGCGGacagagcagaagtgatgcagcacacacacacacaagcagaggcCGTCCCAATGTGTGCACAGGTATATACACAGTTTCTTTTATTGGGTTACTTGTCCTATAGTATACACAGACAAGCTTAGCTTGTAAGTGAGATTTTTTCAGTCTTCTGACAGCCTCGGATTCATAAAATGCTCTTATGATATCAGTCTCGTGTCTTAAGAGAAGTGGCCGTGGTTAGCTGATAGACAGGGCCAGGCTGACATGTCACATGAGGGGGTGTGGTGGTGTTGATCTGATTTAACCTAGCCATTGCAGGTGTGTGGAGATGTATTGAGGATTGATACAGGAAGCAGAGGCGGAGAGCCTCAAGCGGACGGACGCTACAGGCCACACATGCTGGAGACAAACATTTTGGAAGACTGATTCTTATTGagagacattttcttttttcccacAACACGACTTTTTGtaaatacaccttttaaaacctgaacCACAACATGGAGAGCGGGCTTGCTGAGTCCCGACACCGATGAAGGGCTGGTGCAGACCCGACGGCAGAGAGGCTGGGACGCACATCTAAGCGTGCTGGCCGTCTCGATGAGGAAGACACCAAAAGCTAGCAGGCCCAGCTCCGAAAGGCGGAACGCTAAACGACACAGCGgctggcttccTCTACCTTTTCGGGCTGGACTGCGGTGCATTGACGTCGGCTCGCCCTCCCCTGCCCCCTCGCCCCCCAGCAATGGCCTCACGCATTGGCCTGCGGATGCAGctgaTGCGAGACCAGCTGCAGCAAGAGGAGCAGCGTGAGAGGCAGCagatacagcagcagcagcagaatgcAGCCCTGCAATACATGCAGCATTGCATGGCTGGGCCACCTGCACCTACCCCAGCCATTAGCACCCCACAGCATCAACAAAGCATGCAGGTCCCCGTTGAGGTTCTTAAGGTACAGACCCACCTTGAGAATCCTACCGACTACCACATCCGTCAGTCTCGGAGGCAACAGGTGAAAGATTACCTGTCCACCACCTACGCTACCAAACAGACAGTCCATGCAGTAGTAGGGCCGGTGCCGCCCTCTCCTCCCACAAACATGGGACCTACAGGGGGTTCAGCGTctgcccccccaccccttcaCTCCCCACACTTTCGCACTGAGCAGCTCATGTCTGGAAACAGCGCCCCAAACAGCCCCATGGCCATGCTCAACATCTGCTCCAGTCACGAGACAGAGatgGATGACGTcattgatgacatcatcagcatGCAGTCCAACTACGACGAGGCATACATTGACCCCATCCAGATGCCAAACACACTTCCCCTGTCAAGCAGTCACCTGGATGTGTATACAGGTCCGGGGATGAAGGGTCCAGCCATTGCTATGACCAGCAACTCCTGTCCTGCCAACCTGACCGTCAAAAGAGAACTGTCAGAAGCCCGTGCGCTGGCcaaggagagacagaagaaagacAACCACAATCTGAttgaaaggaggaggagattCAACATCAATGATCGTATCAAAGAGCTGGGCACCATGATCCCCAAAACCAATGACCTTGTGCATAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51065 lncRNA upstream 84578 13319684 ~ 13372351 (+) False mdm4
TU51054 lncRNA upstream 144788 13305431 ~ 13312141 (+) False per3
TU51049 lncRNA upstream 153722 13296376 ~ 13303207 (+) False vamp3
TU51006 lncRNA upstream 340357 13115654 ~ 13116572 (+) True G38001
XR_005638901.1 lncRNA upstream 377042 13075419 ~ 13079887 (+) True LOC120556864
XR_005638907.1 lncRNA downstream 247462 13775781 ~ 13777150 (+) True LOC120556887
TU51232 lncRNA downstream 383010 13911329 ~ 13989841 (+) True G38156
TU51240 lncRNA downstream 463590 13991909 ~ 13992179 (+) True G38163
TU51241 lncRNA downstream 474643 14002962 ~ 14003187 (+) True G38164
TU51286 lncRNA downstream 517038 14045357 ~ 14045559 (+) True G38206
XM_039797232.1 mRNA upstream 880 13446291 ~ 13456049 (+) True tmem183a
XM_039797233.1 mRNA upstream 880 13446291 ~ 13456049 (+) False tmem183a
XM_039797231.1 mRNA upstream 74287 13380120 ~ 13382642 (+) True myog
XM_039797211.1 mRNA upstream 84557 13365524 ~ 13372372 (+) False mdm4
XM_039797213.1 mRNA upstream 84557 13365524 ~ 13372372 (+) False mdm4
XM_039797301.1 mRNA downstream 329442 13857761 ~ 13913363 (+) False srgap2
XM_039797298.1 mRNA downstream 329444 13857763 ~ 13919015 (+) True srgap2
XM_039797299.1 mRNA downstream 329444 13857763 ~ 13919015 (+) False srgap2
XM_039797300.1 mRNA downstream 364006 13892325 ~ 13919015 (+) False srgap2
XM_039797302.1 mRNA downstream 392194 13920513 ~ 13941299 (+) True ikbke
TU51060 other upstream 88640 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 170618 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 248671 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 263609 13193247 ~ 13193320 (+) True LOC120558251
XR_005639082.1 other upstream 265018 13191778 ~ 13191911 (+) True LOC120558254
TU51331 other downstream 698896 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 807070 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 1280033 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 1336740 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 2117192 15645511 ~ 15647851 (+) True G38834

Expression Profile