RNA id: XM_039797247.1


Basic Information

Item Value
RNA id XM_039797247.1
length 4709
RNA type mRNA
GC content 0.47
exon number 12
gene id tfeb
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 13456929 ~ 13528319 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttaagagttgttttcattttgagCACGACTTCTTTTCCCGATAGTGCCTGGCAGGATTGGTATTATTAGAGCGCATGAGAGAAGTGGACACGCACTTTTCGTGGACCTGACTTCTTTACTGCGTTCTGTCTGACCTTCAGAGCGGATTGAAATCCACTTTCTTCAGCATCCAGACATGTAGTCAGCAGCATAAGCAGAGCGTACTTCCTCTTGTGAACTCTTTTTCCTCTCAAACAGcttccTCTACCTTTTCGGGCTGGACTGCGGTGCATTGACGTCGGCTCGCCCTCCCCTGCCCCCTCGCCCCCCAGCAATGGCCTCACGCATTGGCCTGCGGATGCAGctgaTGCGAGACCAGCTGCAGCAAGAGGAGCAGCGTGAGAGGCAGCagatacagcagcagcagcagaatgcAGCCCTGCAATACATGCAGCATTGCATGGCTGGGCCACCTGCACCTACCCCAGCCATTAGCACCCCACAGCATCAACAAAGCATGCAGGTCCCCGTTGAGGTTCTTAAGGTACAGACCCACCTTGAGAATCCTACCGACTACCACATCCGTCAGTCTCGGAGGCAACAGGTGAAAGATTACCTGTCCACCACCTACGCTACCAAACAGACAGTCCATGCAGTAGTAGGGCCGGTGCCGCCCTCTCCTCCCACAAACATGGGACCTACAGGGGGTTCAGCGTctgcccccccaccccttcaCTCCCCACACTTTCGCACTGAGCAGCTCATGTCTGGAAACAGCGCCCCAAACAGCCCCATGGCCATGCTCAACATCTGCTCCAGTCACGAGACAGAGatgGATGACGTcattgatgacatcatcagcatGCAGTCCAACTACGACGAGGCATACATTGACCCCATCCAGATGCCAAACACACTTCCCCTGTCAAGCAGTCACCTGGATGTGTATACAGGTCCGGGGATGAAGGGTCCAGCCATTGCTATGACCAGCAACTCCTGTCCTGCCAACCTGACCGTCAAAAGAGAACTGTCAGACGCAGAAGCCCGTGCGCTGGCcaaggagagacagaagaaagacAACCACAATCTGAttgaaaggaggaggagattCAACATCAATGATCGTATCAAAGAGCTGGGCACCATGATCCCCAAAACCAATGACCTTGACGTGCGCTGGAACAAAGGCACTATACTGCGGGCGTCTGTGGAGTACATCAAACGCATGCAGAAGGATGCACATAGGTCAAGAGAGGTGGAGAACAACTTCAAAAGGATGGAGATGGCAAACAAACAACTGATGCTACGCATTCAGGAGTTGGAGATGCAGGCTCGTATACATGGCCTGCCCAGCAACTCTCCTTCTGCCCTGAACCCGCCTGACCTGATGCCTTCGTATATAAAGCAAGAGACCAGCCCAGAGGAGAACCTCTCTCACCCCCTGGCACACGCCCACCACCAGCCCCAGCACTTACCCCAGAACCAGGGTCATCCCCAGGCCCAGCAGCACCACTTCCTCCCGCAAACCCACCTCCACCCCCAGGGCCAGGTTCAGCAACAGCACAGGCAGCTGCCCCCGCTCCCCCAACACCTGCAGCAGCCCCAGCCACCCATCCAGTACCCAGCTGTAGGCAGCTCCCAGCCCTTTGACTTTACCCAGTCGCTGGACTTGTGTGATGGGATACCCGGCTTCTCAGACGGCATGTCGGGGCTAGGCGACCTGGGCGGACTGGATGTCCAGGGGACGAGAGGCGAGATGGGCTTCCTGATGATGGACGAGCCCTTGTCCCCTATGGGAGGAGACCCACTGCTCTCTGCGATGTCGCCTGAAGCCTCGGTCGACTCCAGCCGCAGATCCAGCTTCAGCATAGAGGATGGAGACATACTGTAGACacatgcgcgcgcgcgcacacacacacacacacacacacacacacacattcacatgcacAAGCACATGCAGATGCAGAGGTTTCAGAAAGGTTtcagtaaaaatgtaaaaaagcattaaaagtgACAGTTCATCAGCACAACACATTTACAGCACATAGGGCAGAAAGGAATCTGCCACCAGACATGACATCATTcacccagcacacacacacacacacacacactcacatatatatatgtatataatatatacatcaCACAATTTGAACATACACCGATGACACTCATTTGTGGTACAATTATTTCCCCTTAACGACACGAGCAAAAGAAGGTACACGGCCCTCACACAGTTGAAAATATTCTGTATAGTGCAAACgtttgcacgcacacacacacgcgcatgtGAGATAAACTGTGCAGCTTGAAACTTTGCCCAACAGAGCATTTACAAGGTGTGAACCAACGCTGCCAGGTCAGGAGTTATATAGTGTAGCACACGTGGCCTTGTTTCCATAAAGGTGACTCTGAATCATAATTGAACCAGGGACAAAACCAGCAGTTAATTAGATTGACGTTATCAGATACAGGGACAACCGAGTGCATTGTCTCACTTGATAGAGGACAAGTTATTTTCTCCTTACATCAACCTCTTTTAGTAACCATAAATGATTGAGTAAGCGATAgtgaataaaatggaaatagcTTCATGGTCCTACATGCATAATTGATCTTAAGGGGATGCAGTCCAGTCACATTGTTCTCTTCCACCATCTGTTATTCCAGTGTCGGCTTTAGACTCTAGCACAAGCTGTTTGGTGTTTGACAACGATCTGCGTTAGCCTGCTAAGCTGAAATGTGTTCTTCAAGTGTCCACATTTTAGGAAACATTTTAAAACTCACTGGAGGAGGCAGATAATCCAGCATTCAGCAAAGCCCCTTTTAATTTATTGCATATACCCCACTTCTAGCTGTAATTGTGGTCTTCTCACAAACGcatacacatgcaaacacacactgctGTCCCTCAGTTTCTACACCTTTCAACACTTGACACTGCCATGACCTTTGTAGAGTAGAGAATAGTAGAGTAGAGAAAACATTTGGATGGTCTCCAGAATACAGCGTGTCGTCCACAACTGTGAGGTGTCAAAATACTCAGGTACTGTAACAGAATACACAAGCCGGATAATTTTTAAGCAGTAGCAGATGTTAACCTGAACTGTGTCCGGCTCACGACCCCTATCAATGTGCCTTTTCATTTTTGCAGCTGCTGCTCTTCAAAGGCGTGTTTTTATAGGTTGGAGATCCTAACCAGAGTTTAGATTTTAATATCAACTTCAATTATGCCTGTAAATGCTTTAGATTTTGCTTCTGTACCATCTATacctttgttgttgcaggagaTAAACGTTTAATTTTTCTCTCACTAATTGAATTTGTAATGGCCCAGCTTGCATGAGAGGCCCAGGTGAAGGAAATATTTGGTGACAGGGTTTAATACTGTAGAGAGAAAGAGTTAGTTTGTCGTAGCTGGCAGCATACGTAGCGTAGTCGTCACTGTAAAAGCACACACTTGCATTCACGCTGTCACTCGGTTGACAAACAGGCACGCATTAAACCTGCAGATGCTCAcctagtacacacacacacacacacacatgtatgatgaacacatacaaacaataaatacagtgcAGCCGTGAGGCTGTTTTCAGATCAGCTTGTGAACAAGTCTCCTGTGCGTCAGTCTCTCCCCCGGACGAGCTGAGTGAAGCTGCCAGCTGCAGAGGTGAAACTCAGGTCTGCTGTCCGAAGTGCCACCTAATGGAAATCTGCTATCCTACTGGTTACAGTGGTCACGCCGATGGTTGGGGAAGGCCGAGTTGGACCTGACTTGTATCTCTGCTGTGGTAGACCTGGGGCTTGGCTGTGATTTGATATAGCTTATGATCAGTACTGataaaagtaggaaaaaaaacaaaaaacattgatgGTCATCACgtgatttttcttctttttttgtttgattaaaagaagtgtttgttttctttattattattatagtttgttgtttattattatatctCCCAAAGCACTGGAAACTATATTGTTGTTTTGACTTTGTACATGGAAGAATTATTGAATAAGATTTATTTCAGATGTTATATGCCACTAAGCCacttaaatgtattttatttgtgtttgttttagttctatttcaattttattccaaaactaccctttttttttttttcctcagagCCATTTTCAGTATGCACACTGTAAAGGCACACTAGCCACCAATGTTTTATTGGAGAAGGAGTATGTTGCCGTTTATAAACTTCCAGATTTCAACTGACTTTATGAAGAGGTTATGTACATTTATGATGCCATTTTTATATGAttgggtttttatttttgtctctattttaattttttttggagCCAAACAGAAACTTGatcatttgatttgattgatttaaAATTGCTCATTGTATGAATGTAAGCTTTACTACTGGTTCTGGTCGGTTCCTCCCTGACTTTGGTTTCCATGGAGAGTGGAAGACGACTGACTTCACATAAACTCTGAGACGAGGAGTTGTGGTTGCCATGGCGTGCTATCACTGGCTCTGCgttggtctctgtctgtctgccagaGTTGTGCCTTTTCCCTATCAGCCACAGTTTGACTTAGGTTGTACTTTCACCAAGCCAACACTCCAAAGAGCTGCTCAGGCCTCATCTACTCTTCCACTAGAGGGCGCTCTGCAGGCAAACTACACAGGGAAAAGTGGTTCTGATTTTACTGagaatataaaatgttttaccAGAATCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51065 lncRNA upstream 84584 13319684 ~ 13372351 (+) False mdm4
TU51054 lncRNA upstream 144794 13305431 ~ 13312141 (+) False per3
TU51049 lncRNA upstream 153728 13296376 ~ 13303207 (+) False vamp3
TU51006 lncRNA upstream 340363 13115654 ~ 13116572 (+) True G38001
XR_005638901.1 lncRNA upstream 377048 13075419 ~ 13079887 (+) True LOC120556864
XR_005638907.1 lncRNA downstream 272861 13775781 ~ 13777150 (+) True LOC120556887
TU51232 lncRNA downstream 408409 13911329 ~ 13989841 (+) True G38156
TU51240 lncRNA downstream 488989 13991909 ~ 13992179 (+) True G38163
TU51241 lncRNA downstream 500042 14002962 ~ 14003187 (+) True G38164
TU51286 lncRNA downstream 542437 14045357 ~ 14045559 (+) True G38206
XM_039797232.1 mRNA upstream 886 13446291 ~ 13456049 (+) True tmem183a
XM_039797233.1 mRNA upstream 886 13446291 ~ 13456049 (+) False tmem183a
XM_039797231.1 mRNA upstream 74293 13380120 ~ 13382642 (+) True myog
XM_039797213.1 mRNA upstream 84563 13365524 ~ 13372372 (+) False mdm4
XM_039797301.1 mRNA downstream 354841 13857761 ~ 13913363 (+) False srgap2
XM_039797298.1 mRNA downstream 354843 13857763 ~ 13919015 (+) True srgap2
XM_039797299.1 mRNA downstream 354843 13857763 ~ 13919015 (+) False srgap2
XM_039797300.1 mRNA downstream 389405 13892325 ~ 13919015 (+) False srgap2
XM_039797302.1 mRNA downstream 417593 13920513 ~ 13941299 (+) True ikbke
TU51060 other upstream 88646 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 170624 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 248677 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 263615 13193247 ~ 13193320 (+) True LOC120558251
XR_005639082.1 other upstream 265024 13191778 ~ 13191911 (+) True LOC120558254
TU51331 other downstream 724295 14227215 ~ 14233525 (+) False LOC120557956
TU51384 other downstream 832469 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 1305432 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 1362139 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 2142591 15645511 ~ 15647851 (+) True G38834

Expression Profile