RNA id: XM_039798702.1


Basic Information

Item Value
RNA id XM_039798702.1
length 4744
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC120557956
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14227097 ~ 14233537 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTGTACTGTAAGAGTGGAGGAGCTCCTATACATTGAGATTACATCAGATATTATAATCGAGAAAGTGTGTGATAAGAACAAGCAGGGCATCCTGAGAGTCCTCCCGTGTTGCGTGAGTGTTGCAGGAGGGTTGCGCGGTGGTGGGGAGGTGAGAGCTGTCCGGTGCTGAGGAGGGAAGATGAGCTCAGCGCGCGCTGGGGTGCAGGTAACGTCAGCAGTCGGCCGGAGCAAGGAAAGACGCATCCCGCGCCCTCTGCTTGGCTTGAAATGGGATGATATGGGATTTTTCATGTCGACGAAGATCGGAGGGATTCTTGCGTTTGCCTTGGTATTCCTGTCCCTGATGGTGCCAGGAGACTCCGATGCAGAGGTGAACTGTGAGAACATTTATAAGGACTTTTCTGATTGTGTCCTGGAGCTGGGAGAGAGCATGGACAACTATCAGGAGAACGTGACCAGCGAGAGGGGAGTGGAGGCCGTGTGCAGCCACTGGGAAGCTTTCCACACATGTGCCCTCACAGCGCTGTCCGACTGCAAGGAGGAAGTCAGCTCCATCTGGGAGACTCTAAGGCAGGACTCCATGAAGATGCGCTTCCAGGGAAGTCTGTTCGACCTGTGCAGCCCCAGCTCCTCGCCCAGCATAAGTTCGCCTCTTGCTGCCCTCACCCTGCCACTGATAGTGGTGATCATGACTTGGCCCAACTGGTACCCTGTATAGATGAGGTGAGGGTGAGGGTGAGGAGATGGGAGGGGTGAGGAGGAGGGCCTGAAATTACCCTGGGTTCATTCCTCTTGAGTTCAAACTTAAAGCCAAGGATTTAAGAGGTACGAGTGTTTTAATAAGGATTATTTTGACACCGAGCCACAGAGGTCTGTGGCAAGCCAATCAATATTTGCTGTGATGAATAATGTTTAAAATCTCCTCTAGTACTTCCGCTTGATCCTCCCTTATGTCTCAAAACTGATAGTCTAGTTTAGAAAATTACAGTCAGCCAATTTATCAGTCCAGGCAGACTAAGGATACATTCTAAGTATTCAAGGGATTACAGATACAATGTGTGCAGATCAGAACAGTCTGCAGGTACACACCTGTGGCTCTGGGTTACAAGGAGTGGACACAATAGGTGCATCTCATAACCCTTACAttgcctcctcgactcctccacttgcGTCCCTTCCTCGCGTCGAGGAGGTATGGAAGAGACAcgaggaaatcatgggaggagagaggaaccaAGGAAATGTGCTTTTAGAGGgatcctttcctctgaagcgtcacatgaatttgtcagctgaatcggcggagttagcaactctttcagctgcacggcttccgggaaggctgctctcgtgtatcctaaTTGGTAATCCCTCCTCAATGCTcgctcctcggggcagaaataagagctttaacacggccttcaccgaggagggacagaacaacttctggttcagccgaggaccgaggagtcgagAAGCTATCATAAGGGTTATGAGATGCACCTAGTGTCATGAACACCTGTTCATTCTAATGCAATGAATACTATATTTATGAACATTATCATGTTCAATTTATGTAGATTCAACTCTGAGGTAATTTTAAAGCAGTAtttgtttttagttgtttttattatgttcTAAGACAGCAAGGTGTTAATGTGTTTTGTGCCCACGCCTTGTAACATGGATTGTATGGTTTTATCATGATAGTTAAAGGAatggttcaacattttgggaattgGAGGATGATATCTCATCATGTCTGTACACTAAATATGAAGATACTGCCatcagccagttagcttagttaGTTAGCACACAGCTCTTATGGCCATGAAATAGTTTGACACATCACTTGCAGTAAAACCACAActtttgtatggattaaacaaataacATGTGATCTTTAGgcggattttgttacctttcgACAAAGCTAAGATAGCTGTTTCCCACCAGTTTCCTTGTCTTTTAGCTAAGCCAAGCTAACTGGCTCCTGGCTGGAGCTTTATATTTAGTGTACAGACACATCCACTactctgcaagaaagcaaatactgATACGCGTATTTCTGAATTAGTGGAACTACTCCTTTAATTAAGAGTTTATGTGTATGTTAGACACCAAAACACAGATTTTAATCTCTAGTGAGTTTGTATAAATGCAGTCAAACCATTGTGACGTAATTAGCTGCCACAGTGcaagaaaacatttaaaggaGCACTTCACCAATAaaactagcctggatgccagccgaacttagccccgcccacaacattcgacgtcacattctgactagaatctgagtatgaccatgtCAGACTACAATAAAACACCAATATCTTAGAAATTCTTTGCTCTCAGTCattgcaaatttttttttaaatatgttgttgACTTATTAATCGATGAAAGAACCAAACCTAAAGACTGAACCAGACATTAATCTGACAGACTTAATTACACTAAAGCTAGCGACTAAACAATGTTCAGATGTGCTATAGGTGAAATGCCCCTTTAATCTTTTTCCAAATGTAGTAAATGTTTGTGTAAGGGACAATCAAGCCACTTGTATGTAACACTTTTGACCCCTTTTCCCCTCCAGCACTTCAGCCCACTGTGGCTGATGTTGCACGGCTGCTATAAAGACACCAAAAACAGACATCTTGACACGGCATCACACGTTCACTCTCTCAGAACCTCGCCCCACGCTTTGGTTCACTCTAATGCCTGATCAAACTTCTGACCTGCTGATGTTTGTGTAGAAAGAAAATCTGAAGTGTGACTGTTCAGTGTTTCATTATTTCCCACTCCACTTTGTTGGAAAATGCTCACTTGCAATTAACACGATATTACTAAAACTTTACTTTTTAGTACTCCAAGTACTGCATAAATGCAGTTTGTCATACAGTATGTAGATATACTATGCAGGGCTGAATTATATTACAGAGATTttcaaagaagaagaataatGCAGCCATGGAGTGTAATGAAAATTCACCAAATAACCAATGCCTAAGTACTCATACacagtatttattttacttttaaacacCTATAATTCATCTCTAATGAAGTCAAATAATCTATATAGCTAAACAATAGCCTTTTCTTGTAAAATATCCATACAATCACTTTTCTATCAATAGTATTTCAATTGATGATCGACCAATTAATGCATTGCATAATTATATCAAACAAAATAGATTCCAAACTGTGCTGCTCCATGTATCTGTTTCTTGCTTTTAATCGATCTAATTTTGAGAAACTTAGATCTCAAGCTTCAAAAAAGCAGCCATGAATGACTGCGGTGACAGAAAAAAGGGAATGGGTATTACAGTTTgtaacaatataataataagccATGAGAGATATCACTAAttgtaatgctattttaatcAATATGAAATTAGTATCTAGGTAAAGTTTCCTTCCCAGagggaaatatgtttttaatgttacagcAGTGGTCACCTAGATTCAGAGCAAACTGAAAATGAATGAGCGAAAGCATCaatttgtttggtttgtttgtttgtctattTAAAATGGTGTCACGATTTGCACATTTCCTTTAATGCTGATGGTCCTCATAGGCAGTATCAAAATATGGATGATTTGCTGAATATTTTACGTCATCTCTTTGAACCCAAATGCATGAAAATTTTATTGACAGTGCTTCAGAATAATGGGCAGTCTGATAGTAAAAGGAatggttcaacattttgggaattgGAGGATGCGATCTATACCGCTCTCATATCTGTACACTAAATATGAAGATactgccagcagccagttagcttagcttagcacacagCTCCTATGGCCATGAAATAGTTTGATACATCACTTGCGGTAAAACCACAACTTTTGAATGGAATAAACAAATAACATGTTAATTTGTGATCTTTAGgcggattttgttacctttcgACAAAGCTAAGATAGCTGTTTCCCACCAGTTTCCTTGTCTTTTAGCTAAGCCAAGTTAACTGGCTCCTGGCTGGAGCTTTATATTTAGTGTACAGACACATCCACTactcggcaagaaagcaaatactgATACGCGTATTTCTGAATTAGTGGAACTATTCCTTTATTTAAGAGTTTGTATGTTAGACACCAAAACGCAGATTTTAATCTCTAGTGAGTTTGTATAAATGCAGTCAAACCGTCGTGATGTAGGCTAATTAGCTGCCACAGTgcaagaaaacatttaaaacaacaaaaaacagtctGTTGATGTTAACTTGGACACTGGTATCGATCTGTGCATGACGTTAGGTTATAGCTCCTCAGTGTATCAGGATCCTTTTTTATGCAGATTCATTACCcacccacctccacctccactaGCATGTTTGTTCTAGTTGTTTCTATTTATTTCATGTCTAACAAGTGACCGCATTATGTCATCCATTGTGTGTCTGGTGTTGAGAATCCAAAAACAGTTGTGATGTCCTCAAAGCATGAGCAATATGTACGGTCTCTTTTTTTGTAAAGAGAGGACTCTTATCCCTTTGTATGCTGTTGAAGAAAGCATGAAAAGGATCGTTATCATAAGCATTATGAACCCTAATGAGAGTTGAAACATGGAAAGAACTTCTGAATGTAAAAACAAGTTCAGTatccatgttttgtttttagtttacGGATTGAAAAGCACACTATTTACAAGACTGTATAAAGCAATACATGGCAAAGTAacgtgtttgtaataataaagcTCCATGTTTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51342 lncRNA upstream 31680 14193103 ~ 14195417 (+) True G38247
TU51286 lncRNA upstream 181538 14045357 ~ 14045559 (+) True G38206
TU51241 lncRNA upstream 223910 14002962 ~ 14003187 (+) True G38164
TU51240 lncRNA upstream 234918 13991909 ~ 13992179 (+) True G38163
TU51232 lncRNA upstream 237256 13911329 ~ 13989841 (+) True G38156
TU51373 lncRNA downstream 60396 14293933 ~ 14294157 (+) True G38274
TU51375 lncRNA downstream 72223 14305760 ~ 14308441 (+) True G38276
TU51433 lncRNA downstream 231437 14464974 ~ 14466684 (+) True G38317
TU51447 lncRNA downstream 259366 14492903 ~ 14494740 (+) True G38331
TU51611 lncRNA downstream 374302 14607839 ~ 14610422 (+) True G38441
XM_039798693.1 mRNA upstream 1013 14221022 ~ 14226084 (+) True LOC120557951
XM_039798677.1 mRNA upstream 17406 14206169 ~ 14209691 (+) False rh50
XM_039798676.1 mRNA upstream 17406 14206237 ~ 14209691 (+) True rh50
XM_039798652.1 mRNA upstream 62686 14154131 ~ 14164411 (+) True lrrn2
XM_039796511.1 mRNA upstream 94325 14121615 ~ 14132772 (+) True slc6a14
XM_039798680.1 mRNA downstream 8889 14242426 ~ 14248447 (+) True LOC120557947
XM_039798681.1 mRNA downstream 8889 14242426 ~ 14248447 (+) False LOC120557947
XM_039798679.1 mRNA downstream 9896 14243433 ~ 14248447 (+) False LOC120557947
XM_039798687.1 mRNA downstream 19470 14253007 ~ 14258285 (+) True inpp1
XM_039798674.1 mRNA downstream 33427 14266964 ~ 14277429 (+) False nab2
TU51174 other upstream 698778 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 858808 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 940786 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 1018839 13205484 ~ 13208258 (+) False spcs1
XR_005639080.1 other upstream 1033777 13193247 ~ 13193320 (+) True LOC120558251
TU51384 other downstream 101852 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 574815 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 631522 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1411974 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1731877 15965414 ~ 15966107 (+) False ccdc174

Expression Profile