RNA id: TU51375


Basic Information

Item Value
RNA id TU51375
length 1751
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G38276
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14305760 ~ 14308441 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTtcaatttaaattttatttatagtatcaaatcataacaagagttatctcgagacactttacagatagagtaggtctagaccacactctataatttacaaagccccaacaattccagcaatTAAGTATAAGCAGTATGCAAGTCATATGGCCATGTTAACATTTGAATATGCTGCCTTTTGTCCTTTAAAAGTTTAAGATTTCGTTGAACATTTTCTGTATCCTCATAATAAACACTAGCACCTTATGGTAAAAGTCTCCATTATTCCAGTGTAACCAAACCATTGAGAGCATATTATTCAGCTGCAACTAATAGTGATATTTCCACAAATATAAATAGGTCAGATAGTATATAACAAAGTTACTTGTAATGGGAGCAACATATTGTAATTCTTTCTGAGAACAATTCAATGCTGTATGAGCCTCACTGAAACTGAATATGCAATATTGTCGAAACACATGCGAGCAACTACACAATTTAAAATTAAGACaagataatacaataataagAATAATGCAAGCATGTTACATGTATATTCATACACTGAAAATCCAACATAAGACTGACCCCAGAAGGTTGAAGACACATAATGCACATCACTGAAACACAAtcttaacatcagcattttcGCCCAACATTTCTCCAGTCACAAAATAGAAATATTGGGTGGGAAATATCTGACTTCATTAGATTTCTGAAGGTATCTCTGTATTGTTTGACTGTTTTAAGAAGCATAAGCAATGGGAGAATCTTGTTACAAAGATGATGCAAATACATAAATTGTCAGCAAAGCTACAGGACAACAGCTAGAAAACTAACGCAACTCTTGTCCAGTGCACCTTAATGTATTAAATTCAATGGAATGCGTTTTTTTACACTGAACTTGGAAAATTTGGGAAATCTCTATCAAACCCCCTCTGCCCAGCACTTTCAGGACTCAGTTATAACTGTGGATCAAATCTTTATGTCGCCACATTTATATTCTGTCAAGTGTTTCTCAAATAATTCTCCTCCTATCTAagagacagtaaaaaaaacactgacattattacattatatatttttcttttagttgGATGAAAACTGACAGTGAAAGACACAAGAACAGACAGGTAGGATAGTGTTGTTGAACAAGGGTGAGCTGCTGTGAGCTTCTGAAGGCAAAAGCAAGTTTATCACTAGCTGCATTAGGAAGTACAGATGAAACTACTGTAAATTTGATTAAGCACAAAAAAGCTCTCACGACATACACAATAAGCAAATGTATTCTGTATCAGTCTACCGTAGAAGATGCTGTGCTCTTTTATTTACAGAAAACAAAAGGATGCATTGCATTTAAGTTGGCACACAATAGCAGTGATCAGACTGAGTAGTGCAATTTGCACTTTTGATTTGGCCTGTCAGTGTGGTCTCTGCCTGAGTGCAAACTGTCTGTACTTTGAAATTATTTAGAATTTTATCAGGAATTAGAGTGCAAAAGACATACACAATAATGCTTAATAATAgaaacacacagttacacactcaGCGATGGATGCTCTCTTTTAAATACTCATCCTGCGTCATTCAAGATAATATAGATGTTCTGTTGTGACTCAGCAGATTGGAGGATGTAGTGGACGCGTTAATTTACTTGAGGTTAAAGAAGCCAGTTGGTTTTGTTGGTGCAGCCATCAGCATTTTAGCTTGGTTCTTGTGAGTTATGTGGatAGTACATGGAGGCTGCATCCAGGGCTCCCCATCAATTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51373 lncRNA upstream 11603 14293933 ~ 14294157 (+) True G38274
TU51342 lncRNA upstream 110343 14193103 ~ 14195417 (+) True G38247
TU51286 lncRNA upstream 260201 14045357 ~ 14045559 (+) True G38206
TU51241 lncRNA upstream 302573 14002962 ~ 14003187 (+) True G38164
TU51240 lncRNA upstream 313581 13991909 ~ 13992179 (+) True G38163
TU51433 lncRNA downstream 156533 14464974 ~ 14466684 (+) True G38317
TU51447 lncRNA downstream 184462 14492903 ~ 14494740 (+) True G38331
TU51611 lncRNA downstream 299398 14607839 ~ 14610422 (+) True G38441
TU51621 lncRNA downstream 334491 14642932 ~ 14690625 (+) False G38449
TU51620 lncRNA downstream 380559 14689000 ~ 14690625 (+) True G38449
XM_039798675.1 mRNA upstream 28330 14268875 ~ 14277430 (+) False nab2
XM_039798674.1 mRNA upstream 28331 14266964 ~ 14277429 (+) False nab2
XM_039798672.1 mRNA upstream 28331 14268877 ~ 14277429 (+) True nab2
XM_039798671.1 mRNA upstream 28331 14268878 ~ 14277429 (+) False nab2
XM_039798673.1 mRNA upstream 28331 14268878 ~ 14277429 (+) False nab2
XM_039798689.1 mRNA downstream 16493 14324934 ~ 14333695 (+) True stx16
XM_039798690.1 mRNA downstream 16493 14324934 ~ 14333695 (+) False stx16
XM_039798691.1 mRNA downstream 16493 14324934 ~ 14333695 (+) False stx16
XM_039798692.1 mRNA downstream 16493 14324934 ~ 14333695 (+) False stx16
XM_039798695.1 mRNA downstream 26719 14335160 ~ 14337227 (+) False LOC120557952
TU51331 other upstream 72235 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 777441 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 937471 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1019449 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 1097502 13205484 ~ 13208258 (+) False spcs1
TU51384 other downstream 26948 14335389 ~ 14337760 (+) True LOC120557952
TU51738 other downstream 499911 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 556618 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1337070 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1656973 15965414 ~ 15966107 (+) False ccdc174

Expression Profile