RNA id: XM_039798695.1


Basic Information

Item Value
RNA id XM_039798695.1
length 1455
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC120557952
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14335160 ~ 14337760 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGTTTCagttaatacaaaaatattcaGATAAAATAATTCACAGCACCCTCTCTGCGGAAGTGCAGGCTAAAATTAAAAAGCCGAAACACAACACCATCTAATTCAGCTGTTAACACTTGTCATATACTGTAACacttgttagctaacgttagctagctggcttAAAGACAGCGTCACATAGATAGCGAACCGCCTAataaaaactgtgaaaatgGCTAATTGACTAGTCTCAATTTATACTAATTTCGCGACGACCTCGCATAAGCTGTTTTTACATTCCCCATAAGCTacagttagttagctagctagctagacctGAAAGGGGACCAACAAGTCTGGCTGTGGCTGGTGCTCATGCTCGTTAACGTAGCTGACTTTATATCAAGTGAACCGACTGTATAACTTACCAAACATGACTTGTGCAGGCGATGAAGACGATCCGTTCCCTGTTGATGACGGTCTGTTTGCGGAAACATTTTCTCAAGACACCGTATACACTTTAGTCGGCCAAGAGCTAAAGATAAGACAGCTGTTCGGTGCCAACCTCGGCGTAGCTGCCCCGGTCTGGGAAGCTgcgCTACACTTGTGTCGTTACTTCGAGGAGCAGTCGGTGGAGTTGAGAGGAAAGCGCATCATAGAGCTGGGAGCAGGGACTGGTGTGGTTGGTATCTTGGCAGCACGCCTcgTCGTGACCCTCACAGACCTTCCTTTGGCTCTTCCCCAACTTCAGGTGAACATCTCTGCTAACATGCCATCCAGTGGTTGGCCTACCAGCCCTCCCACCGTTCTCCCTCTGTCCTGGGGTGAGGACCACATGAACTTCTCTTCTGACTGGGATCTGGTGCTCTGTGCAGATATAATTTACCTCCCAGAgacttacccactgctagtggAGACACTATCCCATTTGTGCAAGAACGGAGCTGTGGTATATCTGTCATCCAAAATGCGAAAAGAGCATAAGACTCCAGGTTTCTATGAGGAATGTTTGCGAAGCAGATTTAATGTGGAGCTTGTTCACTATGATGGCAATCAAAACATTAACATCTACAGGGCATCTTTGAGGAAAGAGCAGTGACAACCTGCTACAGGCATTGGACTTTGGTTAGTTACTGCACTAAGACCATTTGTGACTGTTTTATTggtgcctttttaaaaaaaaaaaaaaacgttgaaaaaaaactgtggaAGCTGGGTTTTACAAAATGCACAGCTGTCATCATGGATAATCCAATGTTGAGGTCAGCCTTCTATCAAGTGACTGTAATTTGAGATTCAGATCATTTTTAACTTTAAGCTgcaattttgtgttttataatgCAACTTGTTACAAATATTTGTACCCTTGTCAACACTGAAGAGAGCTTGCTATCATTGGGTGTCCCCTGTATTGACAGATGTTTTAGTCAATACATTCTATAAGtctaaagattaaaaaaacaaaaacattgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51375 lncRNA upstream 26719 14305760 ~ 14308441 (+) True G38276
TU51373 lncRNA upstream 41003 14293933 ~ 14294157 (+) True G38274
TU51342 lncRNA upstream 139743 14193103 ~ 14195417 (+) True G38247
TU51286 lncRNA upstream 289601 14045357 ~ 14045559 (+) True G38206
TU51241 lncRNA upstream 331973 14002962 ~ 14003187 (+) True G38164
TU51433 lncRNA downstream 127747 14464974 ~ 14466684 (+) True G38317
TU51447 lncRNA downstream 155676 14492903 ~ 14494740 (+) True G38331
TU51611 lncRNA downstream 270612 14607839 ~ 14610422 (+) True G38441
TU51621 lncRNA downstream 305705 14642932 ~ 14690625 (+) False G38449
TU51620 lncRNA downstream 351773 14689000 ~ 14690625 (+) True G38449
XM_039798689.1 mRNA upstream 1465 14324934 ~ 14333695 (+) True stx16
XM_039798690.1 mRNA upstream 1465 14324934 ~ 14333695 (+) False stx16
XM_039798691.1 mRNA upstream 1465 14324934 ~ 14333695 (+) False stx16
XM_039798692.1 mRNA upstream 1465 14324934 ~ 14333695 (+) False stx16
XM_039798675.1 mRNA upstream 57730 14268875 ~ 14277430 (+) False nab2
XM_039798649.1 mRNA downstream 2421 14339648 ~ 14345605 (+) False si:ch211-159e12.5
XM_039798647.1 mRNA downstream 2422 14339649 ~ 14345605 (+) True si:ch211-159e12.5
XM_039798648.1 mRNA downstream 2422 14339649 ~ 14345605 (+) False si:ch211-159e12.5
XM_039798651.1 mRNA downstream 79209 14416436 ~ 14435022 (+) False ankrd52b
XM_039798650.1 mRNA downstream 79862 14417089 ~ 14435022 (+) True ankrd52b
TU51331 other upstream 101635 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 806841 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 966871 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1048849 13286239 ~ 13286311 (+) True trnar-acg_15
TU51031 other upstream 1126902 13205484 ~ 13208258 (+) False spcs1
TU51738 other downstream 471125 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 527832 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 1308284 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1628187 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1712678 16049905 ~ 16050430 (+) False eefsec

Expression Profile