RNA id: TU51699


Basic Information

Item Value
RNA id TU51699
length 1219
lncRNA type sense_over
GC content 0.39
exon number 2
gene id cdk4
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14740609 ~ 14757359 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtggaaataaaggcctaaaaagccccaaaaaataatctttaaagcgcccatattatgctcattttcaggttcataattgtattttaaggttgtaccagaataggtttacatggtttaattttcaaaaaacaccatatttttgttgtactgcacagctctctctcactgctgcagatcctcttttcacctggtttctgttttagttacagagtgagacctcttttcatcttcttcttctgtactatctttgattgcactcgcacatgctcagtagctcagatgtagatcatgtcagctagctagctctagagacagtaaaagaaagcctgtttctccaactttggtcagttacaaggcaggattagctgggagacttctaaatgaaggcacacatAAAATGCTGACCTTCGACCCACTGAAACGAATATCTGCCCTGAATGCCCTAGAACACCCATATTTCCAGGACGAGGAGACATTGACTTGAAATGATGCAGTGAAACGTGCAGCAAGAGGTCACAGCGTCTACGTTTTAGACCCGGCCCAACCATAAAGGATTTCAATTTCATTCAGTGCATTGCCTTTCAAGACGTCATGGTTATGCTTTGGGATATTATTTTTGTTACTCCTACATCGAAAAAGGATTAAAGCCTGAGAAatggaattaaaaaaagaagaggagtgAACTTGAAGATCGCTGGCATGCTTTCCAACGTCACAATTAATTACCATGTGGTGTCTTCAAGGACAGTACCAGTGTTTTTTGAGGTTTGATCAGTCTCGTCCACGCAGACACGTCTGTCATCTCCTCTGAAATGTTGCTTGTGTTACTTTTGTACAGTGTTTCGACAGAAGAAAGCAGAGATGTCGTCTTTTCTCGTTAAAGGCTGAACATATTCTGAAAGAAGTGACGCGTGAGGGTTAGAACAGCCAGTCGTTAGTGattttactgtatttgtgtTCATTATTATCATGCTTAAGGAACAATTACACCATAGGTTTTATGAAAAttatgagaaaatgaaagaatagTCGGAAGTAGCAGAAGGAAAATGAATAAGAAAGACACATGACAAAAATACTGGTATTGCCCTTAAATACTTATTGGAGGACTGAAGAGGTGTACTTCATTTCATGTCTAacattttttgtctgtttgctAAAACCATCTGAAATCAACCAGCACTGCAActacaaatgaataaaaaactGTTTTAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51682 lncRNA upstream 40766 14712784 ~ 14714517 (+) True G38495
TU51683 lncRNA upstream 43149 14710726 ~ 14712134 (+) True G38496
TU51621 lncRNA upstream 64658 14642932 ~ 14690625 (+) False G38449
TU51620 lncRNA upstream 64658 14689000 ~ 14690625 (+) True G38449
TU51611 lncRNA upstream 144861 14607839 ~ 14610422 (+) True G38441
TU51717 lncRNA downstream 7939 14765297 ~ 14856007 (+) False znf740a
TU51712 lncRNA downstream 49290 14806648 ~ 14857069 (+) False znf740a
TU51749 lncRNA downstream 105964 14863322 ~ 14864107 (+) True G38526
TU51770 lncRNA downstream 158320 14915678 ~ 14972297 (+) True G38538
TU51769 lncRNA downstream 212315 14969673 ~ 14976904 (+) False G38538
XM_039799141.1 mRNA upstream 86829 14652797 ~ 14668454 (+) True LOC120558200
XM_039799142.1 mRNA upstream 87710 14652797 ~ 14667573 (+) False LOC120558200
XM_039799143.1 mRNA upstream 87710 14652797 ~ 14667573 (+) False LOC120558200
XM_039799098.1 mRNA upstream 104849 14638398 ~ 14650434 (+) True timeless
XM_039799140.1 mRNA upstream 117843 14631878 ~ 14637440 (+) True prph
XM_039797384.1 mRNA downstream 481 14757839 ~ 14777895 (+) False LOC120557243
XM_039797383.1 mRNA downstream 482 14757840 ~ 14777895 (+) True LOC120557243
XM_039796966.1 mRNA downstream 76003 14833361 ~ 14856782 (+) False znf740a
XM_039796972.1 mRNA downstream 76003 14833361 ~ 14856782 (+) False znf740a
XM_039796961.1 mRNA downstream 76003 14833361 ~ 14856782 (+) False znf740a
TU51384 other upstream 417523 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 521758 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1226964 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1386994 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1468972 13286239 ~ 13286311 (+) True trnar-acg_15
TU51738 other downstream 50994 14808352 ~ 14816436 (+) True G38517
XR_005638919.1 other downstream 107701 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 888153 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1208056 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1292547 16049905 ~ 16050430 (+) False eefsec

Expression Profile