RNA id: TU51712


Basic Information

Item Value
RNA id TU51712
length 1563
lncRNA type sense_over
GC content 0.34
exon number 2
gene id znf740a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14765297 ~ 14857069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATGATTGTGAGGTTTAAATCTAAAAGCATGTTTATTTAATGAGTTTGCATGGAATAGCAAATACAGAAAGTAATTCTTGTCACACGGTTTGAGctgtttcagaaaaaaacaagtgCTGCATAACACGTTTTAGAGGCCAGTGGCACAGAAGCTACTTTTTGAAGTAGGGCAGGACTTCAGCTCTCTATATGAGACAGATACACTACTTAAAGTGATCTGTAACCTTTTGTGAACAGCAGCTACTGTGGCCACAAGTGACAAACATGGGAAGATGCTATATGCTAAAACATAATGTAACCGTAACACAAGTAAAGAAGGGTCATGAAGTCCCCTAACTGACGCGGTATTGTTTGTTATATACTACTATCTACTTTAGTTAGCTAACATAAGCTAACATAGATAGACCTAGATAAGGCTGTAGAGCCAAAACCCCTGAGTGTATTGAATTGAGCAAGGGTGTGTTTTATTAGTTATGAATTCAACTTTTCATGTCTTtgactaaaatatatattatagacCTATTATCATTTTACAAAGTTGTTGTAGCTAAGGCGTAGTGtatgcagtaaccacagctttTAGCCAAAAAAGTGTCTaattacacatccagcagtacATTAAGCAACATTGGCATTTATTTTGCAGTCATGTTTTTGGCCACCCCATGAATGTAAATCCAATATTCCTTCTTCTtttagtgttgttgttgttgaactCATGAGAGAAATATGTGTCTCTTTACCTGATAGATGCTCCAATATAtttattacaatttttttttttttttTGTGTTAGATTTTAGGTTTTAGACCAAGCCTATTTCTCCTCAACTTGACACAGAAGGTGGACAGAACAATTTGGATCAGTACAGTTGAGAGCCCAGTATGTTCGGTAATTTAGAGGCAGTAGTACcacaagaaaatgttttctttcttataCGAAGTCCCTGGTATTTGTAGTAAATTATATTGATAATGGTATTAGATGAACAACAGCATAACAGTAGCTATCACAGATTAGTTGTTTTCTTTATTAGTCTTGCATGCAGAGTTATGGTCCTCCGTTAAGATAGGATCTTGATATTGATTATTTTGTGTAGGAAAATGAGTGCATAAGAATaacttcctaaaaaaaaaataaaaaaaaatgttacaatgATTATTGTAAAATGGGCTAACTAATATGTACCCTTGTGATCCAATTAGTTTCAACTATATGAAAATCAGAGGAGAGGCTTCTTACTATTATGcggaaataaaataatttgtaaAGGACTTTTGTATGCTTACTGGCTGTGTTGACTTCATTTTGAGTTCAGTACAAATGCGGAGACAGCCcgaaaatgataaaaatgagtTTCTGTTTCAAATTCACCTGTCgcttacattttattttgtttgtatgaAATTATGTTTTGCATTGTGTGATCATGCAACCAGCTACGCTCATGttctgatttaatttttttaagtagTACAAACCCATCCCTTTGACTTTACACATCAGTCCTTACACAGAATTCCCATGATTACCAATTTGATGGATGAAAAGTATAATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51699 lncRNA upstream 49290 14755283 ~ 14757358 (+) False cdk4
TU51682 lncRNA upstream 92131 14712784 ~ 14714517 (+) True G38495
TU51683 lncRNA upstream 94514 14710726 ~ 14712134 (+) True G38496
TU51621 lncRNA upstream 116023 14642932 ~ 14690625 (+) False G38449
TU51749 lncRNA downstream 6253 14863322 ~ 14864107 (+) True G38526
TU51770 lncRNA downstream 58609 14915678 ~ 14972297 (+) True G38538
TU51769 lncRNA downstream 112604 14969673 ~ 14976904 (+) False G38538
TU51940 lncRNA downstream 393500 15250569 ~ 15250933 (+) True G38670
TU52021 lncRNA downstream 539660 15396729 ~ 15397507 (+) True G38738
XM_039797384.1 mRNA upstream 28753 14757839 ~ 14777895 (+) False LOC120557243
XM_039797383.1 mRNA upstream 28753 14757840 ~ 14777895 (+) True LOC120557243
XM_039796369.1 mRNA upstream 49289 14740609 ~ 14757359 (+) True cdk4
XM_039799141.1 mRNA upstream 138194 14652797 ~ 14668454 (+) True LOC120558200
XM_039799142.1 mRNA upstream 139075 14652797 ~ 14667573 (+) False LOC120558200
XM_039796979.1 mRNA downstream 392 14857461 ~ 14861776 (+) True smug1
XM_039796975.1 mRNA downstream 7990 14865059 ~ 14874459 (+) False calcoco1b
XM_039796977.1 mRNA downstream 7990 14865059 ~ 14874459 (+) False calcoco1b
XM_039796978.1 mRNA downstream 7990 14865059 ~ 14874459 (+) False calcoco1b
XM_039796976.1 mRNA downstream 7990 14865059 ~ 14874459 (+) False calcoco1b
TU51384 other upstream 468888 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 573123 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1278329 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1438359 13365554 ~ 13368289 (+) False mdm4
unassigned_transcript_200 other upstream 1520337 13286239 ~ 13286311 (+) True trnar-acg_15
XR_005638919.1 other downstream 7990 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 788442 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1108345 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1192836 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1576169 16433238 ~ 16435229 (+) True G39104

Expression Profile