RNA id: XM_039796959.1


Basic Information

Item Value
RNA id XM_039796959.1
length 5706
RNA type mRNA
GC content 0.44
exon number 20
gene id znf740a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14765297 ~ 14857069 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCGCCAAAACTACCACAATATGTCTGCTAATCCctatttctgtcattttagtgtCCACTCCTTCCTTGTTATCTGCGTCTTTTCAGTCGTCGTCTGAATCTGCTACAGACACGCAAGCTACCCCATAACAACATTTAAAGGCGTAAGATCTTCACAACGATATAAAAATGCATTAACAAACAGATTCTGTCCGCActtaaaccatagactgttaatattacagTCTGTGACTTAAACCAACGCTCTCTGTTCACTGGGAGCTGGTCGAAGAAGATGACCCTTTTCTCTTCGCTTGAGAAAGCTTTGCTGCTgtgtgggggagagagagggggttaCATCCTGTGGCGTTTCCTGTGTTTGTAAACTAGACGGTCTTGAAAACGTCGGGCGAGTGAAGCTGAAAGttTAAATGCTAGATGAGTGAGGTGGGTGTGGCTTCCCACCAGCCCGACCATCCTGACTGACGGATCTCTGGATGACCTTGTCCCCACCCCTGTCCCTGCGCTCACATACACCACAGCAATGTCACATCTGCCCAGCAGCTCAGTCCGCGACCATATGAAATGGGCGGGGCTGCTTGGCTGCGAGGCTGTCCTCTCCAGCATGGCCCTGATGCAGGCCAGCTCCATGGCCGCTCCGCCCAAAAAGATGATGGCTCCACTTGGCCATGGACCACCGCAGAGAGAGGGACCTGATCGTGCTCCCCAGAGCCATATGATCCTCCCATCCGGAATGAGCTGTCCACCCCTGGTTAGGACCCACTTCGGAAATCTTATCCGGAAGGAAGGTGAATTCCAAGCTCCCCGCCTGCTGGATGAGAAGGAGATGAGGGCCAACGAGGACatgcagcagaaaaaaaagaacaggaaaTCAGTTACGCCCTGCAAAGTGAGAGAACAAGAAGGAAGGGGAGGGAAGGGCACAGGTGGAGATGAGAATGGTCCATCATCCAAAGTGCAGAAAAACTTTATTTGTGATCACTGTTACGGAGCATTTAGAAGTGGATACCACCTGAAGAGACACATCCTCATTCATACAGGGGAGAAGCCGTATGCTTGTGCCGTATGTGACATGAGGTTTATTCAGCGTTACCACCTGGAGAGACACAGCCTCATTCACACGGgggtgAAGCCGTACGCTTGTTCCATGTGTGACATGAGGTTTTTCCAGCGTTACCACCTGGAGAGACACAGACTCACTCATACGGGGGTGAAGCCATACGCTTGCTCCATGTGTGACATGAGGTTCTTCCAACGTTACCATCTGGCAAGACACAGCCTCACTCATACTGGGGTGAAGCCATACGCTTGCTCCATGTGTGACATGAGATTTTTCCAACGCTACCACTTGGCAAGGCACAGCCTCACTCATACGGGGGTGAAGCCATACGCTTGCTCCATGTGTGACATGAGGTTCTTCCAGCGTTACCATTTGGCAAGACACAGCCTCACTCATACTGGGGTGAAGCCGTATGCTTGTACCATGTGTGACATGAGGTTTATACAACGTTACCAGCTGGAGAGACACAGTCTTACTCATACGGGGGTGAAGCCGTACGCTTGCACCATGTGTGACAAGAGGTTTTTTCAGCGCTACCACCTGGCAAGACACAGCCTCACTCATATGGGTGTGAAACCTTATGCTTGCACCATGTGTGACATGAAGTTTTTTCAGCGTTACCACCTGGCGAGACACAGCCTCACTCATACGGGTGTGAAACCTTATGCTTGCACCATGTGTGACAAGAGGTTTTTTCAGCGCTACCACCTGGCGAGACACAGCCTCACTCATATGGGTGTGAAACCTTTTGCTTGCACCATGTGTGACATGAGGTTTGTTCAGCGTTACCACCTGGCGAGACACAGCCTCACTCATACGGGTGTGAAACCTTATGCTTGCACCATGTGTGACAAGAGGTTTTTTCAGCGCTACCACCTGGCGAGACACAGCCTCACTCATATGGGTGTGAAACCTTTTGCTTGCACCATGTGTGACATGAGGTTTGTTCAGCGCTACCACCTGGCGAGACACAGCCTCACTCATACGGgggtgAAGCCGTATGCTTGTTCCATGTGTGACATGAGGTTTATTCAGCGTAACCACCTGGAGAGACACAGCCTCACTCATACGGGAGAGAAGCCATTTGCTTGTGACATGTGTGATATGAGGTTTATCCAGCGCTACCACCTTGAGAGACACAAGCGTGTCCATAGTGGGGAGAAGCCTTACCAGTGTGAACGGTGCCAGCAGAACTTTTCACGGACAGACCGGCTATTGCGGCATCGGCGGTTGTGTCAGGGTCGCGGCGTAGCCAAAGTAGAGAACCAGCCATGCTGCGAACCACGCCCATACCCCCAAGAACCCCCGCCCGCACCCCAAACTTGGAGTCCCCTGCACCCACCTCCAGGCCGACTGGCGGTTTGACATTCCACCTTCCGTACATCCACAACACCGCCGAGACGGGACAAGCCACAGGGTTTCTTCTTCTCAGCTCTGTGCTGAGTGACGCCACGCTCTAGCACAGACTGATCTTGCAGCTCTAGTCCTGGGATTACTAACGACAGAgggacatttgtgttttttgttttgttgactttttaCTGTTTCCTTTACCttcctgtttttttaaagaCGAGACTTTtctgtgatgaacagtggtccTGTTTTGTACTTAAtctatttgatttaaaaaaaagaaaaaaaaaaaggtttttattgTTCAAATATATCTGCATTTGGTGGTACTCGGGAAGGGCTATGGGTATTGTTGATCCTGAtgtgttagcaacaaaatgggaTGAAGTGGTGAGAGAAAAGTATTTGAGCTTCTTTCTAATTGTTCATGTGGCCCATTTTGACTCAAAAAGATTCTCACTTAGGTCAGAATTAGTAAAACTGAACTTTCCTTCCAGGTGAAGCAAGGAAACCACTCTGTGACATCTCATGGAGGCCAGATCCTGCTCGCCATTGTCACTAACGTAGTGCTCAGCATTACGACATTTCAATGAAAGCAGTATCTGGTCTAAATATAATTCGAACTATAGGATTTCCATGACTTTATCAACTTAGGAGGTACAATTTTATTGATTACTTTGTGTAAataattgaaaatgttttattattgtttcaCTATGGGACTTAAGTGGTGAGtgttttttgtatacaaaatgggCCAAAAACAAACTCATTAGAAATGGGTTCAAATACAGTCTTCTTCCATCGTTTCAGTGAAATCATAAGGAAACCTGAGTAACTTGTGTgtttattaaaacaaagtaaTATCAGGCCGCGCTTCATAACTGTAAACCAGGACTTTCAAGAAGTGGATGAGAGGGGCAGCCTGCGGTTGACTGGCTCTGTACgacatgaaggctgggtcacaGGAGTATCACCTGTGGATCTCCCGTTCTGTGACGTGCTGATGACTCAGGAAATGGCACAGGATGGCAGCCTTGGCAAGTCGTCCTCCCACACTTAACAGAGAGTTATTGCAAGTTCAGCTGtgtatgtacacagtatgtatacGCAGAGATCCCCAGTACGTAACCGAAAAGTGTCTCTCCTTGCTCTGTCCATAGATTCTGGTCTAAAATGGCACAGGTTGGCCACTTGAAGTCCCATTATGTTGTTTGTACAGATACTCTCATTGTGAGATTATCGGGGGTATACAAAATCTTGTGGCCTTagtgtgtatcttttttttattttttatttttttttgccttttatcTCAACAGTTTTTTATTGTGGATCAGACGTATTTAAGACGAGACGGCCTTTCATCAtggttttttgttttctcttttttttcctaaagCTGTCATGGTTACAGAATGTTGATGGCTTCAGTGGCGCTAAAACAGACTAATGTGTTCTCCTGTCGAGAGAGGTTGTCTTTTCATGATAATGAATATTTTGGGTCATTGTTACTGATTACAGTGTAACACAGTATGTGAAGCCCCGGCAGTTTGACAGTCCTTGTGAGAAGTCTAGTGCTAAACTGTTTCCCACTCCAGTGCTATGGCTGGTCGCACGCCATGGCAGAATCAACACTTGCTTGACTCTACTACACACTAACAATTGCCTTTTTTATCCAAATATTATGTGGTTGGTGTGTAATAATGGGTGTCTGTCATGTCCTTGGGTTTAGCCTTAAGTAAGTGCGGATACACAAATAATCATTGTAGTACTAAATGATACTGTAACAAACCATTTCTTTTACATATGATGAACTTTGATCGTACGGTGTGAAAGTCTTTGACGGGCAGACAGCAGAGAAGCGGGTTGACCACTTTGCTGCCTGTTGAAAAAGTTTCTCAAACTTGATCCTTTCGGTGACTGGTGAGGTAGTGATCGCATTGTCCTAACTGTTCTGTTGAAGCCAGAAATGGAAGTGCTAAGTGAGAGGATTTGGCTGAACATGCATGTACATATCTAGACATTACAACTGCTCTTTGATGTCTGAGCAAGTAACAAAACCCATCATGGTTGATTTCAGGGGACGAGAGaacgttgttgtttttttcttctgtttttattttttatttttttatgtaaaaggtCCAGGTAAGCTTCAGTGAATGTGGAGATGGAATCCCAGAGTGTATTATCTGGTGTCTGATTTCTAGGATGAACAGATGTTTGTTTGATTCAAGTAAGGAGCAGATTACAGAGTTCAGTAATATTTTACCAAAAGTATTATTGGGGAAAATTAGGAAAGGAAAGGTCCATTGATATCAAGGCAAAGTTGTGCGACGGTTTAAGTGTACAGAGATGGGAttcagtttgtgtgttttgataAGATTAACTAAAACCCAGTGGCAGCAAAGGCGGCAAGTTTGAGAAATCCATTAATTTGCTCTGGAAAGACTATTCCAAATGTGGAAGGGATACTGCTGCTGCGAGCATGTACTGAAATGGCTGAAGGGCAATACATTATATAGTTGACATCACTTGttaataccttttttttgtcttttttttttttaattgtttttagtaTTATCAATCTCATTGTTAAAATGCAATAGAGTCCTTGAGTCACAGATCATTTGTTTATAAGATTGAGGTTTAATTTTTCAGGCAGATATTTGTCTGAGAATTTCTCATAACATTTGGATTGTTTCGAGGACCTTTTTTATTCTGATGAAATTGTAAACACTGGagtgaaaggaagaaaaaaaaaaaaaggacggATGGATATTTTTTCCTTCAGACTGTGTTAGATTTTAGGTTTTAGACCAAGCCTATTTCTCCTCAACTTGACACAGAAGGTGGACAGAACAATTTGGATCAGTACAGTTGAGAGCCCAGTATGTTCGGTAATTTAGAGGCAGTAGTACcacaagaaaatgttttctttcttataCGAAGTCCCTGGTATTTGTAGTAAATTATATTGATAATGGTATTAGATGAACAACAGCATAACAGTAGCTATCACAGATTAGTTGTTTTCTTTATTAGTCTTGCATGCAGAGTTATGGTCCTCCGTTAAGATAGGATCTTGATATTGATTATTTTGTGTAGGAAAATGAGTGCATAAGAATaacttcctaaaaaaaaaataaaaaaaaatgttacaatgATTATTGTAAAATGGGCTAACTAATATGTACCCTTGTGATCCAATTAGTTTCAACTATATGAAAATCAGAGGAGAGGCTTCTTACTATTATGcggaaataaaataatttgtaaAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51699 lncRNA upstream 76004 14755283 ~ 14757358 (+) False cdk4
TU51682 lncRNA upstream 118845 14712784 ~ 14714517 (+) True G38495
TU51683 lncRNA upstream 121228 14710726 ~ 14712134 (+) True G38496
TU51621 lncRNA upstream 142737 14642932 ~ 14690625 (+) False G38449
TU51749 lncRNA downstream 6540 14863322 ~ 14864107 (+) True G38526
TU51770 lncRNA downstream 58896 14915678 ~ 14972297 (+) True G38538
TU51769 lncRNA downstream 112891 14969673 ~ 14976904 (+) False G38538
TU51940 lncRNA downstream 393787 15250569 ~ 15250933 (+) True G38670
TU52021 lncRNA downstream 539947 15396729 ~ 15397507 (+) True G38738
XM_039797384.1 mRNA upstream 55467 14757839 ~ 14777895 (+) False LOC120557243
XM_039797383.1 mRNA upstream 55467 14757840 ~ 14777895 (+) True LOC120557243
XM_039796369.1 mRNA upstream 76003 14740609 ~ 14757359 (+) True cdk4
XM_039799142.1 mRNA upstream 165789 14652797 ~ 14667573 (+) False LOC120558200
XM_039796979.1 mRNA downstream 679 14857461 ~ 14861776 (+) True smug1
XM_039796975.1 mRNA downstream 8277 14865059 ~ 14874459 (+) False calcoco1b
XM_039796977.1 mRNA downstream 8277 14865059 ~ 14874459 (+) False calcoco1b
XM_039796978.1 mRNA downstream 8277 14865059 ~ 14874459 (+) False calcoco1b
XM_039796976.1 mRNA downstream 8277 14865059 ~ 14874459 (+) False calcoco1b
TU51738 other upstream 16926 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 495602 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 599837 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1305043 13456929 ~ 13528319 (+) False tfeb
TU51060 other upstream 1465073 13365554 ~ 13368289 (+) False mdm4
XR_005638919.1 other downstream 8277 14865059 ~ 14874459 (+) True calcoco1b
TU52135 other downstream 788729 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 1108632 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1193123 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1576456 16433238 ~ 16435229 (+) True G39104

Expression Profile