RNA id: TU51770


Basic Information

Item Value
RNA id TU51770
length 2267
lncRNA type read_through
GC content 0.36
exon number 2
gene id G38538
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 14915678 ~ 14976904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTGTCTTGCtctgggggttacggtgaataagctaaattcccaataagtcggcgtgttcctttaacaaacTCAACAACCAACTTGGATTTATTACCCTCATGAACAAGATGACATCAGGGCAATAGagtttttcatgaatcactatTTTGAAGTTTTTTACCCTTTATGTAATTTTGTCCATACTATCCTGCCCTGACATAGCTTACACCTGGCTGATATCTCACTGTAGTCGTTCACTCACTCTGGCCAtctctgtgtactgtatgtgtctttgtATTGCTCCAGGGTCTACTGTGACCCCACCATCCAACAGTGTGGGTTTAAACAGTCAATATGCTTATAAGTGGACAACACACCAAAAACGTAAGTTAAGTATGACCTGTTTATCCATCATTGAGCCAAAAAGGTAGCCTGACAAgtcagacccacatcaagatgttgggtctgggaactcaccattggcagggctcaatccgaggggcgggataaacggttttctttcaaattccctctgcacgcaataggatagcgctacaaccaggcagagcaacgctagctgatagattaaacttttgctgtatccggtcggcaaaactccgaacacatcttccttttttaagaatgacttcagtgtcgttctttgttcttttctcaaagaaaagcttaactcgaAGTCtctaagcccgcccaccgactctatacacgatgtgattggcctgaccagaatttggtttttccagcttgcaagccaacggagagttgctagactgaccctggctgcaaattacatttgctacCGCTAGGGTGAGTCTAGATGTCTAGGCTACCAAAAAGGAAGAAAATCTGAAAATCTGCACTTTTAGGTTGAGCTTGCTTTAATAACTGACTGTTTCACAAGCTATGTACAGTAGAtacagtttgttttttacttgtttttaatTCACATTATcataaatgtttaatgttttcctgtgtgtgtatgacatTTTCAGCTCAGTTTGAGCATGGATGTTATTTGGGGAAAATACTGTTTGAGCGAAACCTGAACTAGTGGATTTCAACTAACTTCAAGTGTTTTGAAACAAAGATACAACACCAACCATAGGGGAAATGTGTTTGTAGCATCATACATACTTTAACAGCATGCTTTAGTTATTAGACATCAGTTGCAATTTCTATTGTAACTTTAATGTGGCCTTTGGGATGCGATAGAAAATGATTTCAAGTAAACAAGTTGATGATCAGAACATCAGCATTAGAAATGTTTATGATGGTGATTATTATAATAAAGTATTAAGTATAATTTCTTCACAGCTGTTCCATTCCAAATGTCCTTGCAGGACAACTTTTAAACTTTGTGCACAGATAAGAATCAGTTAGGTATCTGCGTGGTTaccattgactgtaaatattagaTACATAAAAACACAGTTCACCCAATCATTGAAACAAggcttttattaaaaaagaaaagaaaaattgacATATTAAAATTCAAAGAGAAAACcaagaaagaaggaaaaccTTATCtcaatcaataaaaaaacacaagttaCAGACAATTTAGCAACTGTGGCACAGGAAGACAAAAGTAGCCAAGTGGCTTTGCAAAATAACCAAATATCAAAACCTATTTCCTCTTAACAAAACTGTACAAAATGAGTTCTTGTATAAATAAGAAAACTGTTCACAAGCAGAGAGTGAGATGAGCCCATCAGATTTTCAAAATGGGATTCACACAAACTTGGTTCATACAGTGTAGAGCAAcaagttttattattttatgttcaAAAATGTCGCTTTAAGACAACATTTCTGAGTTTTAATCATGTAAAATATAACTATTTGAACTgcacattaataaaacaatagCAAAAATAATTTCTGTTTATTAGTATCATGCAGTTACTAAAACTGAACAAATGAGGGATACTCTGTATCAACCAAATTAAAAGGGGACATTTTGAAAATCCAGACTGGGCAACATCTAACATCCTGTTTGGAAATCCTGTTTTAGCAGCAAAACATTTTGAAGCTATGAAATAAGCCATCTAATCTGCATTAGGATGGACGAAAAGAGCATTTTCAAATTGGTGTGGACTCAAAACAATAGGTGCAAGgagattttttcttcttcaaatgTGTACTGTCTATAGAGCACACTGTTGTGTGTATTCCCACAGCTTAAATGTAACTTAAGTTTCTATTATTGTAATGGTGCACAATCATTTTGGAGAATAATCACTTCCTGTAATATTATCTCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU51749 lncRNA upstream 51571 14863322 ~ 14864107 (+) True G38526
TU51712 lncRNA upstream 58609 14806648 ~ 14857069 (+) False znf740a
TU51717 lncRNA upstream 59671 14765297 ~ 14856007 (+) False znf740a
TU51699 lncRNA upstream 158320 14755283 ~ 14757358 (+) False cdk4
TU51682 lncRNA upstream 201161 14712784 ~ 14714517 (+) True G38495
TU51940 lncRNA downstream 278272 15250569 ~ 15250933 (+) True G38670
TU52021 lncRNA downstream 424432 15396729 ~ 15397507 (+) True G38738
TU52045 lncRNA downstream 490004 15462301 ~ 15463452 (+) True G38762
TU52079 lncRNA downstream 569956 15542253 ~ 15543372 (+) True G38788
TU52129 lncRNA downstream 654014 15626311 ~ 15626840 (+) True G38829
XM_039796975.1 mRNA upstream 41219 14865059 ~ 14874459 (+) False calcoco1b
XM_039796977.1 mRNA upstream 41219 14865059 ~ 14874459 (+) False calcoco1b
XM_039796978.1 mRNA upstream 41219 14865059 ~ 14874459 (+) False calcoco1b
XM_039796976.1 mRNA upstream 41219 14865059 ~ 14874459 (+) False calcoco1b
XM_039796979.1 mRNA upstream 53902 14857461 ~ 14861776 (+) True smug1
XM_039796560.1 mRNA downstream 47176 15019473 ~ 15118158 (+) True LOC120556827
XM_039796562.1 mRNA downstream 47176 15019473 ~ 15118158 (+) False LOC120556827
XM_039796561.1 mRNA downstream 47176 15019473 ~ 15118158 (+) False LOC120556827
XM_039796563.1 mRNA downstream 47176 15019473 ~ 15118158 (+) False LOC120556827
XM_039796383.1 mRNA downstream 185411 15157708 ~ 15159398 (+) False LOC120556705
XR_005638919.1 other upstream 41219 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 99242 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 577918 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 682153 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 1387359 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 673214 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 993117 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 1077608 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 1460941 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 1545239 16517536 ~ 16543580 (+) True G39116

Expression Profile