RNA id: TU52133


Basic Information

Item Value
RNA id TU52133
length 339
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G38832
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15644061 ~ 15644399 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cgaagaaaaaaaaacagttcacaAAACAATCCggactcaaggtccacttactttGACTAAAATCAAGGTCTTATGGGTGCTAGGAGTCTTGCAAAGTTTGAACATCGATAACTATGGCAACTGAACAATTTCCAAGTGCTGATGAGAACCATGcaaattttattcttttttttattctatataATAAATCACTCAATTTTTGTTGTATAAAGTCTGATCTGTTTAATTTTCTCATATAGATGCAATTTCCCTTTGATATAGATCACATTGCATCGCATGTCACTTATGTTCATATAGTTCATCATTATTATAATGACAATGTAATCTATAGTTTTTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52129 lncRNA upstream 17221 15626311 ~ 15626840 (+) True G38829
TU52079 lncRNA upstream 100689 15542253 ~ 15543372 (+) True G38788
TU52045 lncRNA upstream 180609 15462301 ~ 15463452 (+) True G38762
TU52021 lncRNA upstream 246554 15396729 ~ 15397507 (+) True G38738
TU51940 lncRNA upstream 393128 15250569 ~ 15250933 (+) True G38670
TU52158 lncRNA downstream 29580 15673979 ~ 15755059 (+) True G38852
TU52172 lncRNA downstream 74597 15718996 ~ 15722184 (+) True G38858
TU52174 lncRNA downstream 83580 15727979 ~ 15729400 (+) True G38860
TU52211 lncRNA downstream 116393 15760792 ~ 15762315 (+) True G38885
TU52290 lncRNA downstream 270140 15914539 ~ 15914901 (+) True G38948
XM_039798065.1 mRNA upstream 506 15631352 ~ 15643555 (+) True smarcc2
XM_039798066.1 mRNA upstream 506 15631352 ~ 15643555 (+) False smarcc2
XM_039796349.1 mRNA upstream 18016 15606682 ~ 15626045 (+) True LOC120556683
XM_039796730.1 mRNA downstream 13132 15657531 ~ 15661996 (+) True endou
XM_039798516.1 mRNA downstream 32468 15676867 ~ 15709140 (+) True LOC120557865
XM_039798517.1 mRNA downstream 39683 15684082 ~ 15709140 (+) False LOC120557865
XM_039796376.1 mRNA downstream 65817 15710216 ~ 15710890 (+) True LOC120556700
XM_039796501.1 mRNA downstream 68850 15713249 ~ 15715495 (+) True LOC120556777
XR_005638919.1 other upstream 769602 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 827625 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1306301 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1410536 14227215 ~ 14233525 (+) False LOC120557956
TU51174 other upstream 2115742 13456929 ~ 13528319 (+) False tfeb
TU52135 other downstream 1112 15645511 ~ 15647851 (+) True G38834
TU52306 other downstream 321015 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 405506 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 788839 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 873137 16517536 ~ 16543580 (+) True G39116

Expression Profile