RNA id: TU52158


Basic Information

Item Value
RNA id TU52158
length 482
lncRNA type read_through
GC content 0.44
exon number 2
gene id G38852
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15673979 ~ 15755059 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaaagaaaaataaaaaaaaaaaaaaaaaaaaaggtacatcACCATCTATCAAAACTGGATCCCATCAAAAGGGACAATGCATAACTTCCTTCAACTGCACAAGTACAGCTGAGACGTTGCGGTTTCATCGTGCAACATATAACTGGTGCCTAgtacagacacatagacacacggACACGTTTTCTGCATGTGCAAACAGATGAGTTGACATTATCTGCCAGGTTTAATAGCAGTAATTGAAACACTGGGGCTCTATTTCAAATTTGCGGCTGCACTTCAGAGTCCCCCTCCCTGCTGGTTTTCACAGGAGTTCACCGTTACAAAAGGTGCACTGAATGTACTGAATGAGCTCATATGTCCACGTCATCTGAGTCAGAGGCGCTGGATGACTGCGACTCCTCCTGAGACTCTCCCCACACAAACCTATAGTTGTTCTCCAAGTCCTGCTGCCTCTTTTGCTCTTTGTAAACCTCTTCTGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52133 lncRNA upstream 29580 15644061 ~ 15644399 (+) True G38832
TU52129 lncRNA upstream 47139 15626311 ~ 15626840 (+) True G38829
TU52079 lncRNA upstream 130607 15542253 ~ 15543372 (+) True G38788
TU52045 lncRNA upstream 210527 15462301 ~ 15463452 (+) True G38762
TU52021 lncRNA upstream 276472 15396729 ~ 15397507 (+) True G38738
TU52211 lncRNA downstream 5733 15760792 ~ 15762315 (+) True G38885
TU52290 lncRNA downstream 159480 15914539 ~ 15914901 (+) True G38948
XR_005638940.1 lncRNA downstream 164326 15919385 ~ 15921616 (+) True LOC120557201
TU52300 lncRNA downstream 164371 15919430 ~ 15921622 (+) False LOC120557201
TU52303 lncRNA downstream 181282 15936341 ~ 15937084 (+) False crbn
XM_039796730.1 mRNA upstream 11983 15657531 ~ 15661996 (+) True endou
XM_039798065.1 mRNA upstream 30424 15631352 ~ 15643555 (+) True smarcc2
XM_039798066.1 mRNA upstream 30424 15631352 ~ 15643555 (+) False smarcc2
XM_039796351.1 mRNA upstream 47934 15606682 ~ 15626045 (+) False LOC120556683
XM_039798865.1 mRNA downstream 17130 15772189 ~ 15789905 (+) False b4galnt1b
XM_039798862.1 mRNA downstream 21404 15776463 ~ 15789905 (+) True b4galnt1b
XM_039798864.1 mRNA downstream 22958 15778017 ~ 15789905 (+) False b4galnt1b
XM_039798863.1 mRNA downstream 22971 15778030 ~ 15789905 (+) False b4galnt1b
XM_039796826.1 mRNA downstream 63564 15818623 ~ 15823565 (+) False ankrd33ab
TU52135 other upstream 26128 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 799520 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 857543 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1336219 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1440454 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 210355 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 294846 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 678179 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 762477 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1357054 17112113 ~ 17119890 (+) True G39351

Expression Profile