RNA id: TU52172


Basic Information

Item Value
RNA id TU52172
length 2969
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G38858
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15718996 ~ 15722184 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccgggatccattagcccctgcgctaagctattcagctgataacgctaactctcccaatgttcgacccaggtgaaaaaagcttctgggggggttgtttggcccGAGgtcaaaggaccctagggtgaaattactccgaaccatcactttaataactACTTTTTGGTTCTGAGCAGTTGCCAGGCGACCACATTCAGATGGATTCTCACAATATCACCAGATCACGAGAGAGAATCGCTGAATCACGTAtcacacaaaaatccatcttgtcaggcttcaagtaatgcatTTGTGTCCAAACAGCAGTGGACCGAACCAATCAGCATccggtgaggagctactggcagctaagGTTGTGGTTTAGATGTGTGTGACGGCGGCGACTGTTGGTTCTACAGactaaaagagaaaaacatattTCCTCAAACTTTTCTATACGTGTCTTTTAAAACcctgaaaaatatatttaatggaTTGAAATGTAACCACTGTAAGATCAAATGCTATCGCTACCACAATTACTCCTAGtgataatactaataataatatagccATATTATCTTTGATTTCATGATTGATCATTACAGGTGGTATTGTTTCCTATGGCTATGTGCTGTTTTCATTTTACAGTGTCTTTCAATTGATGTTAATAGATAGACCATGCAAAGTGTTAAAGTATTCAAGCATCAGAAGGGAGAAttaaaatgcaatacaaatttaaattaacatgtcagtaacatttttttctcaaaccaATCTTCGCACCTGTTAGATCATATGTTCAGTAGAGCAGACTACTGTATACATGCATGCAGTAGAAGCATCCCACAGCCCCACGGGATGTTAGTTAGGAGTTAAACAATTTCATAGCTGTCGCCTGACATCTATCTAGACAGCATCTTCCCCACTGACTTCCTACCCCACAAGGCCAAAATAGAGAGGGGAACACAGAGCTCTGTGACAAAGGGAGAGCAATTTGTTGGATGAGGTTTTCAGCTGGATGGGACAGCAAGGAGAGCCATGACTCACCAGCTGCCTCTCCAGACAGGCCATTCATTGGCTCCAGGCCTTCACCCTGTGCCATGTCAGAGGACATGGGTGACCTAGCCTCCAGTGTGTTCCTACATGACCAATGACAAACAGTCATTACAACCAGTTGCTCATGTCATGACATAAAAAAGGGCGTGGGTACACTACTTCTTAGATGAAGCAAGTGCACTTTTAGTTTGTAGTTGTTGTTTCTGTAGAAATACATTTGCAATACAAAGGACGATTTTGTATTAATTCAAACAAGCAAGACACTGTAAACCAGCCTGGAGAAAATTAATAATATACTTACTCCTTGGAAACAAACACTAGTTTGGTTTTGATGTACTTTATGTAAGGACTGTCACTCCACTCCTCTCAGAGTAGTATTTTCCGAAAGCCTCGTCTTTAGGGGTGTTGGGATATAGGTAGAGCAGAGGATTTTCTGGGATATTTTCAGCTTCTAAGATCTGGAAATTCCTGATGATTTCATGAAACGGGATCTGGCAGAGGTCAACTTTGGTGAAGGGTTGGACTGTCTTTACATCAGGCTCACCTACAAATAGACAGTGGTAAAAGTAAGTTTAACTTATCCAACAGGACGCTTGTTTGTCTACATTGTAACaatatcaaaagaaaaaaaattaagagtcattatgaaataaaaatatctcACCAGTTATGGTGGTGTCTACCCAGGAGAAGGTGATTCCTCCAATGACACTTTCACTGAAGCGCAACAAGAACGTGCCTCTTTGTTTCTTCTTCAGGAGGGACTTCTCTTTGCCTTTGCTCACAAAACCCATGATGAGGCTACAGTACAGATAAAACGTCTTACATAAAACAAGAAACTTCTCCCAATTCCCAGGAATTAAATGCATGGGGTAAACTGCTATGTATTAAACCAAGATTAGACTAAAACACACCCTTCCCTCCACAGGTCTTCAAGGTACGTCTTCACCATCACCAAGATGCCATCAAACCACACCCAGAAAGTGTCAGGAGTATTTTCCTGTAACAAAAGGTGTGGCATAGGTCATCAATTCACACCTACAGTACATTCACTAACCATGTTTGATACCAGGAAGCTGACATGCacattagcactaaacacaaaataaattatgGGAATTCAGTCGTTAGTTTTGcagatatttggtcataaatctAAATATTGAACAAACTAACATAATATGATGGTGGCTCTAGAGGAAGAAATCAAGATATCACTAAAACAGCGACAATTCAGCTCGAGGGGTGACAggaatgtttgtaccaaaagtAATGGCAATCCTTCCAGTTGTTGtcgacatttcactcaaaacccgAAATTCATGGTGACACCAGATGGAAAAGTCACGGGATCACCAAAGTTGAGATATTCTGAGTCGAATTGTTAGGGTTTCTAGGATTCAGTATTCTTACCTTGCTAAATTTTGACCAAGGTACTTTATGGGTGTCatagttctgctgctttcctgGTGGGATAGAAAAAAAGATGCATTATACAACTCTCATTCACTGACATCATCTATAATAAATCATGCATTTTTGCTGTattgaggttgtttttttattttatctttaaatGTAAAACCAATCAATTAAAGATGCATTTTAGTAACTTGTGTCAAAATTGGATCAAGGTGTTTCCTGACATTATGTTTGACTGACAGATGAATGAATGTGGCTCTTTTTATAGACAGAACTGCAAAAATAGGCAAAGACAAGCAACTGAAGCAGACCATAGAAGCAACATTTACCAAAGAGTCTGTGTGCAATCATTTCCAGCTGAGCCTCATTCAGACCACGTTTAGTGGCAGCGAGAAACTGCCAGCTCAACATCTCTCCAAACTGCAGCCAAGGGGCTGCAGCAGAGTTGGCGAAGAACAACACATCCTGGAAAACAGACCCATattaacaaatatatacacaactGATTTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52133 lncRNA upstream 74597 15644061 ~ 15644399 (+) True G38832
TU52129 lncRNA upstream 92156 15626311 ~ 15626840 (+) True G38829
TU52079 lncRNA upstream 175624 15542253 ~ 15543372 (+) True G38788
TU52045 lncRNA upstream 255544 15462301 ~ 15463452 (+) True G38762
TU52021 lncRNA upstream 321489 15396729 ~ 15397507 (+) True G38738
TU52174 lncRNA downstream 5795 15727979 ~ 15729400 (+) True G38860
TU52211 lncRNA downstream 38608 15760792 ~ 15762315 (+) True G38885
TU52290 lncRNA downstream 192355 15914539 ~ 15914901 (+) True G38948
XR_005638940.1 lncRNA downstream 197201 15919385 ~ 15921616 (+) True LOC120557201
TU52300 lncRNA downstream 197246 15919430 ~ 15921622 (+) False LOC120557201
XM_039796501.1 mRNA upstream 3501 15713249 ~ 15715495 (+) True LOC120556777
XM_039796376.1 mRNA upstream 8106 15710216 ~ 15710890 (+) True LOC120556700
XM_039798516.1 mRNA upstream 9856 15676867 ~ 15709140 (+) True LOC120557865
XM_039798517.1 mRNA upstream 9856 15684082 ~ 15709140 (+) False LOC120557865
XM_039796730.1 mRNA upstream 57000 15657531 ~ 15661996 (+) True endou
XM_039798870.1 mRNA downstream 14361 15736545 ~ 15741669 (+) True tac3b
XM_039798865.1 mRNA downstream 50005 15772189 ~ 15789905 (+) False b4galnt1b
XM_039798862.1 mRNA downstream 54279 15776463 ~ 15789905 (+) True b4galnt1b
XM_039798864.1 mRNA downstream 55833 15778017 ~ 15789905 (+) False b4galnt1b
XM_039798863.1 mRNA downstream 55846 15778030 ~ 15789905 (+) False b4galnt1b
TU52135 other upstream 71145 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 844537 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 902560 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1381236 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1485471 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 243230 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 327721 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 711054 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 795352 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1389929 17112113 ~ 17119890 (+) True G39351

Expression Profile