RNA id: TU52211


Basic Information

Item Value
RNA id TU52211
length 1122
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G38885
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15760792 ~ 15762315 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caaaaaaaaaaaaaaaaaaaaaaaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcaatcttaTCAGAGGGCACTGAGAGGTCGGCCATCTCATCCTCAAACTCCTGTAGCAGGCGCTCATCTTCATCTTCCTCGACGGGCTTCTCCGTTACCCTGTTGTCTGCCGGTTTCTCTCCCTGACTTTTGGCTTGCTTTTGtgctttCTTCCTGTTACTCTCTTTGAGATGTTGGACAAATTTCATCAGGTCTGCTGGGTCAGTGATGATTTTAAAGTTGAATTTTTCAACTTCATCACCATCATCTATGGCTTCATTGTCTGTAAGTGAGTTATAGCGATCATCTGCTTCCTGTGTGTAGAATACAAAATCTGGTTAGTAGGGAGGGAATATATCAGCTTACACTCTCTAGTGGCTGGGATCTGGTTGGAGAAAAAACAcctctacatttaaaaaaatatatacagtatacagtatcaTCAGTTAATCACACGTTTGGTGAATATACACAACAATAAAGTATAAATgtatcaacttttttttttttttaaagcttccCCAGTTTTGATATTGTGGACATGACATCAGTAGCCCAGCCTTTCATTTACCAGAGAAGCaccattcatttaaaaaggaaaaaattgaTTCTAAGACGTATTTCTAGACCTGATTCTCCGATTGAGAAGCAGTTGTTTTTGAACTCCTTGGCTGTGTAACTCCCTCCCAGAAGTCAGAATCTTCTGCCTCCTCTGACCCGGCACCCTCAAATACTTCAGCAGTatctgtttaaaaataaaaggcacACACAAGTTTACATCTGGCATGATGTGAAATTTAAAAAACTgtgaatatttttatttatttgaatttaCAAATTACTACAATCATTTGAAGGTCATTTGCCCTttaagtataaaaaaataaataaaaatgcaccTTTTGTGTCTGACTGGTTCAGGTCATCACTGGGTGCAGGTGATGTCTCTTCTGCTGTTACTTCCACTGCTCCATCTGCCCCTTCGTTGCCAGCCAACATCTCATCAAGACTCCTCAGTTCCTCTGAGATCTGCTCTACTTTACGCTTTGTATCCGCTAGAAACAAGggaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52158 lncRNA upstream 5733 15673979 ~ 15755059 (+) True G38852
TU52174 lncRNA upstream 31392 15727979 ~ 15729400 (+) True G38860
TU52172 lncRNA upstream 38608 15718996 ~ 15722184 (+) True G38858
TU52133 lncRNA upstream 116393 15644061 ~ 15644399 (+) True G38832
TU52129 lncRNA upstream 133952 15626311 ~ 15626840 (+) True G38829
TU52290 lncRNA downstream 152224 15914539 ~ 15914901 (+) True G38948
XR_005638940.1 lncRNA downstream 157070 15919385 ~ 15921616 (+) True LOC120557201
TU52300 lncRNA downstream 157115 15919430 ~ 15921622 (+) False LOC120557201
TU52303 lncRNA downstream 174026 15936341 ~ 15937084 (+) False crbn
TU52310 lncRNA downstream 222309 15984624 ~ 15985096 (+) True G38966
XM_039798870.1 mRNA upstream 19123 15736545 ~ 15741669 (+) True tac3b
XM_039796501.1 mRNA upstream 45297 15713249 ~ 15715495 (+) True LOC120556777
XM_039796376.1 mRNA upstream 49902 15710216 ~ 15710890 (+) True LOC120556700
XM_039798516.1 mRNA upstream 51652 15676867 ~ 15709140 (+) True LOC120557865
XM_039798517.1 mRNA upstream 51652 15684082 ~ 15709140 (+) False LOC120557865
XM_039798865.1 mRNA downstream 9874 15772189 ~ 15789905 (+) False b4galnt1b
XM_039798862.1 mRNA downstream 14148 15776463 ~ 15789905 (+) True b4galnt1b
XM_039798864.1 mRNA downstream 15702 15778017 ~ 15789905 (+) False b4galnt1b
XM_039798863.1 mRNA downstream 15715 15778030 ~ 15789905 (+) False b4galnt1b
XM_039796826.1 mRNA downstream 56308 15818623 ~ 15823565 (+) False ankrd33ab
TU52135 other upstream 112941 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 886333 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 944356 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1423032 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1527267 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 203099 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 287590 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 670923 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 755221 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1349798 17112113 ~ 17119890 (+) True G39351

Expression Profile