RNA id: TU52290


Basic Information

Item Value
RNA id TU52290
length 363
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G38948
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15914539 ~ 15914901 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACATCGCCCTCTCCTGAGCATCAGGATGGTTTTGTGCATTAGTCATGTCTAGGTTAGAGAAGTTTATTCTATGATCAATTTGAAAGATTTctgacaaatgaaaaaaaaattatttcaaacTCAGTTTAATAACTACTGGAGCTTTTGACCATATCACACAGTCCTCGTCAGCTAATTAAGGTTTCTCAATTGTCTTTCCATGAATCTAAGTGTATCAATGACTGCATTTGCTAATGAGGACTGTGTAATTAAAAGCTGTGGATACATTACTAAGTGGACCTTGAGATGGTAGTTGCAAGAAGATATCATTCCAATGGATTTCTATGTTAttatttggaaataaaataaaattctacCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52211 lncRNA upstream 152224 15760792 ~ 15762315 (+) True G38885
TU52158 lncRNA upstream 159480 15673979 ~ 15755059 (+) True G38852
TU52174 lncRNA upstream 185139 15727979 ~ 15729400 (+) True G38860
TU52172 lncRNA upstream 192355 15718996 ~ 15722184 (+) True G38858
TU52133 lncRNA upstream 270140 15644061 ~ 15644399 (+) True G38832
XR_005638940.1 lncRNA downstream 4484 15919385 ~ 15921616 (+) True LOC120557201
TU52300 lncRNA downstream 4529 15919430 ~ 15921622 (+) False LOC120557201
TU52303 lncRNA downstream 21440 15936341 ~ 15937084 (+) False crbn
TU52310 lncRNA downstream 69723 15984624 ~ 15985096 (+) True G38966
TU52394 lncRNA downstream 241812 16156713 ~ 16158362 (+) True LOC120557902
XM_039797315.1 mRNA upstream 920 15903500 ~ 15913619 (+) True pa2g4a
XM_039798378.1 mRNA upstream 14638 15879790 ~ 15899901 (+) True erbb3a
XM_039798848.1 mRNA upstream 37679 15871718 ~ 15876860 (+) False arf3b
XM_039798849.1 mRNA upstream 37679 15872990 ~ 15876860 (+) True arf3b
XM_039798051.1 mRNA upstream 54768 15851997 ~ 15859771 (+) False LOC120557571
XM_039796379.1 mRNA downstream 8420 15923321 ~ 15937097 (+) True crbn
XM_039798752.1 mRNA downstream 27863 15942764 ~ 15945552 (+) True vhl
XM_039798754.1 mRNA downstream 33548 15948449 ~ 15959849 (+) False tatdn2
XM_039798755.1 mRNA downstream 37659 15952560 ~ 15960280 (+) True tatdn2
XM_039796380.1 mRNA downstream 50501 15965402 ~ 15974237 (+) True ccdc174
TU52135 other upstream 266688 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1040080 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1098103 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1576779 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1681014 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 50513 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 135004 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 518337 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 602635 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1197212 17112113 ~ 17119890 (+) True G39351

Expression Profile