RNA id: XM_039796379.1


Basic Information

Item Value
RNA id XM_039796379.1
length 4076
RNA type mRNA
GC content 0.42
exon number 10
gene id crbn
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 15923321 ~ 15937097 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgaaaaaggtctatttagGGTGTTCAAATGGGAgcatgagagaaaagaaaaaaagttgggaaccagagaagagacacacaatctcggtggattattttaatttccaATTTTGAGTCTTGTGACACATCGCCAGGGGGCGCTTGGGGTCTGTCTTGACGCTGCACACTGAAGACGCCGTAGAAGAAGAGTTAGTATAGTAAACACAAGGATATGGCTGACGAGAGGGCTGGAGGTGAAGACAACATTAACGACAACATGGGGAACCAGTTACAGCTTTTACCAGAcaacgaggaagaggaggaggaagataaCATGGAGACTGAAGACCGAGACAGTGAGGTAGCAGAGAAGCCCACCCTCATCACCTTTGACCCCAGTCTTCCCACATCACATTCTTACCTGGGTTCAGACATGGAGGAGTTTCACGGCCGTACAGTCCACGATGAAGACAGCTGTCAGACCATCCCTGTGCTGCCACACACAGCTGTGATGCTGGTGCCAGGCCAGACGCTGCCTCTGCAGCTCTTCAGGCCGCAGGAGGTCAGTATGATGCGGAGCATCATCCAGAGAGACCGCACCTTTGCTGTGCTCGCACACAGCAATGACACGGGTGAGCCGGATGCAGAGTTTGGGACAACAGCGGAAATCTATGCTTACCGAGAAGAGCAGGAATATGGCATTGAAACTGTCAAAGTGAAAGCTGTGGGGAGGCAGAGATTCAAGGTCCATGAGATAAGAACTCAGGCAGACGGGATCAGACAAGCCAAAGTACAGATCCTTCCAGAACGAATCCTTCCAGATCCTCTCTCTGCCGTGCAGCTAACACCCCTCTCCAGGCTCCACATGCACCCCTCCTCCAAACCCCCAACTCAGAGCTGCAAACAGGCCCAGCACTGGTGGAATAACTACCAACAGAGGAAGTTTCACTGTGCCAGTCTGACGCCATGGCCACCCTGGGTCTACGCTCTCTACGACTCTGAGTCGCTAATGAACAGAGTGAAGAAACAGCTCCATGAATGGGACGAGAATCTGAAGGATGACTCTCTCCCGACGAACGCCGTAGACTTCTCCTACAGAGTGGCAGCCTGTCTGCCCATAGATGACGCTCTGCGGCTCCAGCTGCTGAAGATCGGCAGTGCCATTCAGAGACTTCGCTGTGAACTGGACATCATGGACCGGGTAAGGAAAGATATCCCACCTGCCTCTTCCTGCAGCTTGTCTCTGTACGGCCCCATGGCTGCATACGTCAACCCTCACGGTTACGTCCATGAAACCCTGACTGTCTACAAAGCAAACAACCTCAACCTGGTCGGCAGGCCATCCACACTGCACAGCTGGTTTCCAGGGTACGCCTGGACAATTGCTCAGTGCCGAACCTGCGGGTCTCATATGGGTTGGAAGTTCACAGCCACCAAGAAGGACTTGACTCCAGCTCGTTTCTGGGGTCTGACCCGTTCAGCTATGCTCCCTCGTATCCCCCAGGAcaagggggaggaggggagacaGGGCTCCCGCCTCTTCTGCCTGTGAAGTTGAACTATTATttatcgtaaaaaaaaaacaacaacaaaaaaactgctAACCCCCCAAGCCTGGATGTTCATGCACTCTCTGGCTGCGATTATCTCTAGTAATCAATGCATCACACAGCGCCTGTCACCCTTAGCAGTAAATCCATCATATTAGTGGAAAGGTCAGTAGGCCTTTAAATGGCGCTCCTAGAGCAAATTAGAACGGAATAGAGGTAGTGATTGTTCTTAAAGGTTTTTGAGATGTAAAAGCAGCAGTGAGACAACTAAGTGCATTGTGAGAAAGTGATGAAGAAATAGAGAATAACAGATTGAACAGATTGTTTCCATGACAGGGCTGACCTGCACCCTCGGtagctgcagacacacaaacacaaaagctatgCTTAATGCATAATTTCCCTTCAACTCCTTTCCTCTGTATGATGGAGAGTTTCATTGCATGCAGCTGAGATAGCAATATTGTTGGTCACATACTTTAATCTGTTGTAAAACCAACCAGTTAATATGAATTATCTTAGCATTCAGATCCTTTTGTGGGTTTCTCAGATATGTTTTTCTCATTTCAGCTGCCGTAAGGTAAGTGGAGGGAATGAAAGGGCACTTGTGTGTAGATCTGTTACTATAGGGGATATTTTGAATCTTGGAATTAGATGTATTTTTGTATGCAGAAAGATTGAAAAGTAATTTAACATAGTCATCCATGTGTGCTTTTTATTATCACATCAGTTTTTTTATGCAATAAACAAAAACTGAGGTGACAATAACCACAATGTGTAATATACTGGTGTATATTGATATGTGCTATAACTGGTGTCGGTTTTGTATTCAACGAAGGTTCATTGTCCTGCCAGATGATGTgcttcaaaaaacaaacaagtggAAATTAGAGATGTCCTGGTGTCTAATGgaggactgtttttttttttctataaaggTTCAAGCTAATTAACACACAGAGCGAGAGAATCTTTTACACATCTTCTTTTAGTTTGTTCATGTGTGGCATGTTAAAATGGTGTGCCTACACCCCAGCTCAGTGTCTTTTGATGAGTTTGATGAATTAGTGAACCACAGATGTCAATAAAAAGGTTGTAAGTGATGAAGAGATAAGATTTACATaattcaacgtttttttttgtggtttgtaCTTTCGCAGTTTTCTGGATTTTACTTCTTGCGATTTTGTTGCAAGGTGCTGGCTCTTGTTTGTATAAATGTAGCTGTAAATAAGAGGCAGTTATAGCATTTTTTGTGCAATATAAATGGTGTTATACTGTTTGTAAGGCTGACTCTTATCTCGCATATATCTTCATGTCACAGGGAATTGTTTCAAAATAATCTTTTCATTAGTAAGTCATTAATCGCAATAAGAAATCCTCTAGATTGTGAAGAGGTTTTGTTGAATTAAATGTTTGGATATTTTCTTGAAGGAAGAAGATTTATACTACTCTCTCATGTCTGTAGGATAAATATTTAGCTAccaccagcagctggttagcttagcatagaacACTGACTGGAAACAGataaacagctagcctggttctgtccaaaggtaacacaaTTTACCTACAAGCaccattacattttattaatcacatatcttgtttgtttaattcatGGAAAAGCcgtgagttaaaaaaaaattgtaagaAAGATAATTTGTGATTTTACAGAGGTTATTGGCTATTTCCTGGATGTGGAGATTCCTGTTCccagttttcacttttttttttttttttttttttttaaattaaataaatgaggcaTTTTTAAACACCGCCAGGCTAGCTGCCTCCATGTGTTTCCAGtcattatgctaagctaagcttacCAGCTGCTGACTGTATCTTGATAGCCTATTTACCGTGCAGCTATGAGAGTGGTATTTTGATCTTGACACATAGGCTTAATCCTCGGCATTAAAGCAAATTTGTGTAGAAATATGGTCATAACTGTTCTTTAAAGGGTGAtggtttttttatttgaaaatgattACATGTTATTCTTATGGTCTATATataagcaccatgtcatgggtgTACAGTTCTGAGTTGTGTGACATatcacttgaggcaatttaGCAGACTTTACTCAGCTCCCCTCTGCagccacaaaaggctttttTCACATATCCAGTCATATTCCCCAAGACCTGGAAACAGACTTTAATATGTCAAATCggtggagttcccctttaagaatCAGAAAATGTAAACTTCCTCAGAAATGTGACGCATTTATTTTgattacattcacattttaaaacttAGACTTCTTATcatatcattttaaaacaaagGTTTTCACCCTGAAAATACCAGGTAAAAATCTTAAATCGCGTGTTACGCCTATTTAAATTCTGTCATGTCGCTGATTCAGTGTTCGCAGGCTGTCAGACTTTCATTCACCCCCAACAATAAAATAGATAGCCTACTTCACTGAAGAAATCGATGGCATTGTTCTGAAAACagctttttcttgtttttttcattgatATTCAGTGTACCACAAAGTAAAATAAACATGCAGTTATCCTGTGA

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0004176 ATP-dependent peptidase activity molecular_function

KEGG:

id description
K11793 CRBN; cereblon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52300 lncRNA upstream 1699 15919430 ~ 15921622 (+) False LOC120557201
XR_005638940.1 lncRNA upstream 1705 15919385 ~ 15921616 (+) True LOC120557201
TU52290 lncRNA upstream 8420 15914539 ~ 15914901 (+) True G38948
TU52211 lncRNA upstream 161006 15760792 ~ 15762315 (+) True G38885
TU52158 lncRNA upstream 168262 15673979 ~ 15755059 (+) True G38852
TU52310 lncRNA downstream 47527 15984624 ~ 15985096 (+) True G38966
TU52394 lncRNA downstream 219616 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA downstream 219616 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA downstream 219616 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA downstream 219616 16156713 ~ 16158362 (+) False LOC120557902
XM_039797315.1 mRNA upstream 9702 15903500 ~ 15913619 (+) True pa2g4a
XM_039798378.1 mRNA upstream 23420 15879790 ~ 15899901 (+) True erbb3a
XM_039798848.1 mRNA upstream 46461 15871718 ~ 15876860 (+) False arf3b
XM_039798849.1 mRNA upstream 46461 15872990 ~ 15876860 (+) True arf3b
XM_039798052.1 mRNA upstream 63550 15852211 ~ 15859771 (+) False LOC120557571
XM_039798752.1 mRNA downstream 5667 15942764 ~ 15945552 (+) True vhl
XM_039798754.1 mRNA downstream 11352 15948449 ~ 15959849 (+) False tatdn2
XM_039798755.1 mRNA downstream 15463 15952560 ~ 15960280 (+) True tatdn2
XM_039796380.1 mRNA downstream 28305 15965402 ~ 15974237 (+) True ccdc174
XM_039798969.1 mRNA downstream 54637 15991734 ~ 16011506 (+) True LOC120558102
TU52135 other upstream 275470 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1048862 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1106885 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1585561 14335389 ~ 14337760 (+) True LOC120557952
TU51331 other upstream 1689796 14227215 ~ 14233525 (+) False LOC120557956
TU52306 other downstream 28317 15965414 ~ 15966107 (+) False ccdc174
TU52330 other downstream 112808 16049905 ~ 16050430 (+) False eefsec
TU52503 other downstream 496141 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 580439 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1175016 17112113 ~ 17119890 (+) True G39351

Expression Profile