RNA id: TU52330


Basic Information

Item Value
RNA id TU52330
length 526
RNA type TUCP
GC content 0.49
exon number 1
gene id eefsec
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16049678 ~ 16060330 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGGAGACGTTTCTCTCaactgttttcatgctgaagtAACGTTAAAGTCTTATTTATAGCTATCTTTGTTTTGTAAACCACTAGCTAACTAATGTAAACAGCTCGTTGTTGAATGTATTTCGGGTTTAATAATCTTGTGTCAACAAATGAAAAGCTTGCTGACAGCAAATAACGCTTTTTGACATTTCCGTTGGAGCTGAGTTCAACGCACGCTGGTTACATCATACTGGCGTCAACATGTCAGAGTCTGCTGACAGTCGTACCAAAACATTAAATTTCAACGTCGGGGTGCTCGGACATGTCGACAGTGGGAAGACATCGCTTGCCAGGGCGCTTAGCAGCACCGCCTCCACGGCTGCCTTCGACAAGAACCCGCAATCCCGTGAGAGGGGCATCACACTGGACCTCGGCTTCTCCTCCTTCACGGTGGATCTTCCAGATCACCTGCGGGACAGCGGAGGCCAGCAGCAGTATGACAGCCTGCAGTTCACCCTGGTGGATTGTCCGGGACACGCCTCTCTTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52310 lncRNA upstream 64809 15984624 ~ 15985096 (+) True G38966
TU52303 lncRNA upstream 112821 15936341 ~ 15937084 (+) False crbn
TU52300 lncRNA upstream 128283 15919430 ~ 15921622 (+) False LOC120557201
XR_005638940.1 lncRNA upstream 128289 15919385 ~ 15921616 (+) True LOC120557201
TU52290 lncRNA upstream 135004 15914539 ~ 15914901 (+) True G38948
TU52394 lncRNA downstream 106283 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA downstream 106283 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA downstream 106283 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA downstream 106283 16156713 ~ 16158362 (+) False LOC120557902
TU52402 lncRNA downstream 106283 16156713 ~ 16158362 (+) False LOC120557902
XM_039798371.1 mRNA upstream 8692 16039813 ~ 16041213 (+) True mustn1a
XM_039798370.1 mRNA upstream 10631 16035974 ~ 16039274 (+) True rft1
XM_039798645.1 mRNA upstream 14943 16016980 ~ 16034962 (+) True prkcda
XM_039798644.1 mRNA upstream 15815 16016979 ~ 16034090 (+) False prkcda
XM_039798969.1 mRNA upstream 38399 15991734 ~ 16011506 (+) True LOC120558102
XM_039798595.1 mRNA downstream 98695 16149125 ~ 16157509 (+) False LOC120557902
XM_039798001.1 mRNA downstream 111530 16161960 ~ 16167138 (+) True arpc4
XM_039796553.1 mRNA downstream 512435 16562865 ~ 16566395 (+) True emc3
XM_039796552.1 mRNA downstream 516271 16566701 ~ 16578215 (+) True usp4
XM_039796555.1 mRNA downstream 533982 16584412 ~ 16605415 (+) False fancd2
TU52306 other upstream 83798 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 402054 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1175446 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1233469 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1712145 14335389 ~ 14337760 (+) True LOC120557952
TU52503 other downstream 382808 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 467106 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1061683 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 1142791 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 1142791 17193221 ~ 17198217 (+) False srsf3b

Expression Profile