RNA id: XM_039796384.1


Basic Information

Item Value
RNA id XM_039796384.1
length 2493
RNA type mRNA
GC content 0.47
exon number 5
gene id eefsec
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16049678 ~ 16060330 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGCTTTGTCGTAGTAGAAACTGCTTACAACTTGTGAAAATGTAGCTAAATAAGAGTCTCAAATGAATGCAGAACTAAAACGATACAGGGTCCTCATCTCCCCATCGACATTTTAGAGTGatgttttaatcattttttttcaggtcagttttcctctttttccttttgtttgctACTGAATAAATGTTCCGCTTTAGCATGTTGTTCCGAGGATGGAGTGCACAAAAAGGGAGACGTTTCTCTCaactgttttcatgctgaagtAACGTTAAAGTCTTATTTATAGCTATCTTTGTTTTGTAAACCACTAGCTAACTAATGTAAACAGCTCGTTGTTGAATGTATTTCGGGTTTAATAATCTTGTGTCAACAAATGAAAAGCTTGCTGACAGCAAATAACGCTTTTTGACATTTCCGTTGGAGCTGAGTTCAACGCACGCTGGTTACATCATACTGGCGTCAACATGTCAGAGTCTGCTGACAGTCGTACCAAAACATTAAATTTCAACGTCGGGGTGCTCGGACATGTCGACAGTGGGAAGACATCGCTTGCCAGGGCGCTTAGCAGCACCGCCTCCACGGCTGCCTTCGACAAGAACCCGCAATCCCGTGAGAGGGGCATCACACTGGACCTCGGCTTCTCCTCCTTCACGGTGGATCTTCCAGATCACCTGCGGGACAGCGGAGGCCAGCAGCAGTATGACAGCCTGCAGTTCACCCTGGTGGATTGTCCGGGACACGCCTCTCTTATTCGGACTATCATTGGGGGTGAGCTCTCTGAATTCTCTGCAAGTTTTGGTGCTACAGGTGTCATCGATAGGTGGGTCCGTTGCTGGAAGTGGGCAGACCTAGGTCATGTGTGGTCCTGGGATCCCCTCCATGTGGTTGTCTACAGTTTTGTTCTGTGTGCCTTCGTCTGTCTGTGGTCTCAGTATGCCACTACTGTGACCAAGAAGATAAAGTCGGTGCAGATGTTTAGAAAGCCAGTGTCGGGGGCCATGCAGGGGGatcgtgtgggtgtgtgtgtgacacagttTGACCCTAAACTGTTAGAGCGAGGTGTGGTTTGCACCCCAGGGTCCATGCGCAACTTCTATGCAGCTGTCATCTCTGTGAGGAAGATAGGCTACTTCAAGGGCTCTCTTGCTACCCGTGCTAAGTTCCACATCACCATGGGTCATGAGACAGTCATGGCGAGGGTTGCCTTCTTTGGCCTGCCGCCTGTGGGTGCGTCAGAGCCCCCCTCAGACACTACACCACCTCCATCACAGCCCTGCTCACTGGATACACCCTTCACCTTCGAGAGGGAGTACTTCTACCAGGATCAATATGTCACCGGTCAGAGAGAGGCAAGTCCAGGACCTGACCCAGAGCAATGGGCCTTGTTGGAGTTTGAGCGGCCAGTCACATGCCCCTCACTCTGCCTGGTGATTGGTTCCAAGCTGGACACAGACATCCAtgccaatgcatgccggttggCTTTCCAAGGCCGTCTGCTCCATGGGTTTGAAGATAAAGGCTATGCTGAGACTGCTCTGCCTCGTCTGCGCATCTACAAGACAAAACACAAGGAGGGCCAGGTGGAAAGGGTGACTGACGATTACACTGTGATTGGCCGCAACCTGTTCAAGAAGGAGACCAACCTCCAGCTCTTTGTGGGGTTGAAGGTCACACTGTCGACAGGCGAGAGTGGCGTTATCGAAGGTGGATTTGGACAGAGCGGGAAGTTCAGGATCCGAGTACAGGAGGGTCTTTGCCCAGAAACCAAGCAGTTGTTAACCTCCACCTCTAAGAAGAAAGTGAAGGGTGGAAGCAAAGGCGAACCAGCACACGAAGAGGAGCCCAAAACACATTCTCAGCCCGTTAGCATTCACTTGCATTTCAAGCGGTATGTCTTTGATCCCCATAAAAAGATGGTTCAGTCTTGACCTTTGTTGCATACACATCAGCCTGTCACAGTGCTTCAAACAGGCAGAAGGTGGTTTCACAGGTCATGTCGAGGTGAGGGGAACACTGGCCTCTGTATCAGGGTTATGATCATTTTCTTCTATCAGCCTCTGATGGAGACAGTCTGCTGAAATGCAATGATTGTGGAACGCATGTGAAacaatgaatttttttttttttaactgcctTTATGGATATGGACTTGATCCAGTTTGCACCATTACAAGGGTGGAAGCAGCTCTTCTGTTTCTAATGCATTTGAGTTgtcttaaacaaaaaaaaaagtaccttttttgtttttttcagtatgTTTCTAATTTAGCTGAGCCTTGATTGGCAAAAACACATCAGCTGGCATTTACGTTTCAGGTTTCATTGGCTGTGTGAtttcaaaatgatttttttaaattttattttactttaatgaCCGTTTGTAGAGCTGGATTTTTACCAAGAATACCAGTTATTCCAGTGACTGCTTGAGTGTATTATAATAACTATCTTtataaaaagacaaataaagcaaaatctatGCTGAAACTTTA

Function

GO:

id name namespace
GO:0006184 obsolete GTP catabolic process biological_process
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03833 selB, EEFSEC; selenocysteine-specific elongation factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52310 lncRNA upstream 64582 15984624 ~ 15985096 (+) True G38966
TU52303 lncRNA upstream 112594 15936341 ~ 15937084 (+) False crbn
TU52300 lncRNA upstream 128056 15919430 ~ 15921622 (+) False LOC120557201
XR_005638940.1 lncRNA upstream 128062 15919385 ~ 15921616 (+) True LOC120557201
TU52290 lncRNA upstream 134777 15914539 ~ 15914901 (+) True G38948
TU52394 lncRNA downstream 96383 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA downstream 96383 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA downstream 96383 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA downstream 96383 16156713 ~ 16158362 (+) False LOC120557902
TU52402 lncRNA downstream 96383 16156713 ~ 16158362 (+) False LOC120557902
XM_039798371.1 mRNA upstream 8465 16039813 ~ 16041213 (+) True mustn1a
XM_039798370.1 mRNA upstream 10404 16035974 ~ 16039274 (+) True rft1
XM_039798645.1 mRNA upstream 14716 16016980 ~ 16034962 (+) True prkcda
XM_039798644.1 mRNA upstream 15588 16016979 ~ 16034090 (+) False prkcda
XM_039798971.1 mRNA upstream 38172 15991734 ~ 16011506 (+) False LOC120558102
XM_039798595.1 mRNA downstream 88795 16149125 ~ 16157509 (+) False LOC120557902
XM_039798001.1 mRNA downstream 101630 16161960 ~ 16167138 (+) True arpc4
XM_039796553.1 mRNA downstream 502535 16562865 ~ 16566395 (+) True emc3
XM_039796552.1 mRNA downstream 506371 16566701 ~ 16578215 (+) True usp4
XM_039796555.1 mRNA downstream 524082 16584412 ~ 16605415 (+) False fancd2
TU52306 other upstream 83571 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 401827 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1175219 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1233242 14808352 ~ 14816436 (+) True G38517
TU51384 other upstream 1711918 14335389 ~ 14337760 (+) True LOC120557952
TU52503 other downstream 372908 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 457206 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 1051783 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 1132891 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 1132891 17193221 ~ 17198217 (+) False srsf3b

Expression Profile