RNA id: TU52400


Basic Information

Item Value
RNA id TU52400
length 1418
lncRNA type sense_over
GC content 0.39
exon number 3
gene id LOC120557902
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16149125 ~ 16158362 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGTGTCAGAGTAAGAACAACATCCCCTACTTTGAGACCAGCGCCAAAGAAGCTATAAATGTAGAACAGGCATTCCAGACAATTGCACGTAACGCCCTCAAACAAGAGACAGAGGTGGAGTTGTATAATGAATTCCCAGAGCCCATAAAACTGGACAGGAATGACAGAGCTAAACCTTCAGCAGAAAGCTGCAGCTGCTAAGGGATAACTTGGACCATCTTCTCTCTTGGCTTTCTGAAACACCCCGTCACCGGTTACATCACCTGCACCTCGCTCCCAGGGAAAAAGACTTCCCTACTGGTCTTCCTCCTTCATGCCATCGGTTCATTCCATCGACACAACCCTTCACGCAGTATGCTGCACATGGATGTaccccacacacgcacacacacagacacacttagtACAAAAATGAATACACTAGCGTACACAAGCTGACAAATCCAGTGCCCAAAGATCACACAAGAGAAGAATGACACCCCTTCTGACCCCACAGTCCCTGACTCAATAGTGAGCTATCTCCTGTCCCGACCACCCATTTTTCTGACTCTCACACTGAGGGGGCAAGATGGAGCTAGTTCAAAGAGTGCAATTGAGAACTCTAGATATAAttgcccatatatatatatatatatatatatatatatataaataaataaatataaattggtGTTATTTCTCAAGCCAATCTGAAAcgcatatttgtttttttgcactttctttttatgtttttgcctttttaaatattatagTGGGATGACTGATTTTGGGCAACGTCTGCTACCACACAGCTTTTAGTAAGCTTCAAATTATACCTCCTCACTTGTTTTTCCTgtcaaatatatcaaaaatatatccCCTGAGAATCTGTTGAACACTTTTGGTGATCGTACTGCCTTTTCCCTTCAAGGTTGTGTGTTAATTGGTTCATAACTGCCTCACACTACAGAGGAAATGTACCTAAGTAGACATTAAGTCAAAGGTGATAATGCAGTCACAGTGTAAAACATGGATTAATTCCTTGATATATTAATATTTGCCTTTTATGTAACATTACTTGTACTGCTACTATTACTGCTGTATGTGTTATGTCCTTTAGCAGACATCTTTCAACACTATGGAATTACAACACGTGTCAACAATACAGCATACACCTGTCTTCTGTCATGTCTTTGTTATTGCTGTTCTCTCTATCTGCTTGTAGCTCAGGTTGGCTAAGTACTTACTATTTTTAACTGATTGTGCATTACAGTGTATAGATGGTAAAGGTAAATGACTGATTGATTGAACTGAAATGGATGTTCTCTCTTTCCATTTTAAGAAAAGATCCAACATTTTGACCTGGTATTTCTTCTccttatagaaaaaaaaatcactgcgATGCCAATGATGTTGTCAAAGAAAATTGGGACGTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52310 lncRNA upstream 171617 15984624 ~ 15985096 (+) True G38966
TU52303 lncRNA upstream 219629 15936341 ~ 15937084 (+) False crbn
TU52300 lncRNA upstream 235091 15919430 ~ 15921622 (+) False LOC120557201
XR_005638940.1 lncRNA upstream 235097 15919385 ~ 15921616 (+) True LOC120557201
TU52290 lncRNA upstream 241812 15914539 ~ 15914901 (+) True G38948
TU52421 lncRNA downstream 37017 16195379 ~ 16195784 (+) True G39052
TU52459 lncRNA downstream 76652 16235014 ~ 16251725 (+) True G39076
TU52514 lncRNA downstream 345076 16503438 ~ 16510185 (+) True G39113
TU52517 lncRNA downstream 359174 16517536 ~ 16522337 (+) False G39116
TU52544 lncRNA downstream 394322 16552684 ~ 16556205 (+) True G39134
XM_039796384.1 mRNA upstream 96383 16049678 ~ 16060330 (+) True eefsec
XM_039798371.1 mRNA upstream 115500 16039813 ~ 16041213 (+) True mustn1a
XM_039798370.1 mRNA upstream 117439 16035974 ~ 16039274 (+) True rft1
XM_039798645.1 mRNA upstream 121751 16016980 ~ 16034962 (+) True prkcda
XM_039798644.1 mRNA upstream 122623 16016979 ~ 16034090 (+) False prkcda
XM_039798001.1 mRNA downstream 3598 16161960 ~ 16167138 (+) True arpc4
XM_039796553.1 mRNA downstream 404503 16562865 ~ 16566395 (+) True emc3
XM_039796552.1 mRNA downstream 408339 16566701 ~ 16578215 (+) True usp4
XM_039796555.1 mRNA downstream 426050 16584412 ~ 16605415 (+) False fancd2
XM_039796556.1 mRNA downstream 426240 16584602 ~ 16605415 (+) True fancd2
TU52330 other upstream 106283 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 190606 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 508862 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1282254 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1340277 14808352 ~ 14816436 (+) True G38517
TU52503 other downstream 274876 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 359174 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 953751 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 1034859 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 1034859 17193221 ~ 17198217 (+) False srsf3b

Expression Profile