RNA id: TU52421


Basic Information

Item Value
RNA id TU52421
length 329
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G39052
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 16195379 ~ 16195784 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCCACCGTGTCTAAAAACTATAACATTTATAATACTGGCACAAATGCAGTGTACAGCCAACACTCACCAACATAATATGGAGTGTAACAGGGAGTTTGGAGGGAGTTGTGCAGTGTCGTCTCCTTAGCAAAGCCAAAGTCAGTCAGTGTCAGTGTGGCGTTACTCTCCTTGGTGGTATAGAGCAGGTTTTCAGGctTCACATCCCTATGAGCGATGTCCATGTGGTGGAGGTACTCTATGGCCGTGCCGATGTCATGCATGATCTCTGACGCCTCTGATGGACAGACATGACATAGATGTAACATGTACGGGACACAGCATAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU52394 lncRNA upstream 37017 16156713 ~ 16158362 (+) True LOC120557902
TU52395 lncRNA upstream 37017 16156713 ~ 16158362 (+) False LOC120557902
TU52396 lncRNA upstream 37017 16156713 ~ 16158362 (+) False LOC120557902
TU52400 lncRNA upstream 37017 16156713 ~ 16158362 (+) False LOC120557902
TU52402 lncRNA upstream 37017 16156713 ~ 16158362 (+) False LOC120557902
TU52459 lncRNA downstream 39230 16235014 ~ 16251725 (+) True G39076
TU52514 lncRNA downstream 307654 16503438 ~ 16510185 (+) True G39113
TU52517 lncRNA downstream 321752 16517536 ~ 16522337 (+) False G39116
TU52544 lncRNA downstream 356900 16552684 ~ 16556205 (+) True G39134
TU52557 lncRNA downstream 383301 16579085 ~ 16579722 (+) True G39143
XM_039798001.1 mRNA upstream 28241 16161960 ~ 16167138 (+) True arpc4
XM_039798595.1 mRNA upstream 37870 16149125 ~ 16157509 (+) False LOC120557902
XM_039796384.1 mRNA upstream 135049 16049678 ~ 16060330 (+) True eefsec
XM_039798371.1 mRNA upstream 154166 16039813 ~ 16041213 (+) True mustn1a
XM_039798370.1 mRNA upstream 156105 16035974 ~ 16039274 (+) True rft1
XM_039796553.1 mRNA downstream 367081 16562865 ~ 16566395 (+) True emc3
XM_039796552.1 mRNA downstream 370917 16566701 ~ 16578215 (+) True usp4
XM_039796555.1 mRNA downstream 388628 16584412 ~ 16605415 (+) False fancd2
XM_039796556.1 mRNA downstream 388818 16584602 ~ 16605415 (+) True fancd2
XM_039796558.1 mRNA downstream 388818 16584602 ~ 16605415 (+) False fancd2
TU52330 other upstream 144949 16049905 ~ 16050430 (+) False eefsec
TU52306 other upstream 229272 15965414 ~ 15966107 (+) False ccdc174
TU52135 other upstream 547528 15645511 ~ 15647851 (+) True G38834
XR_005638919.1 other upstream 1320920 14865059 ~ 14874459 (+) True calcoco1b
TU51738 other upstream 1378943 14808352 ~ 14816436 (+) True G38517
TU52503 other downstream 237454 16433238 ~ 16435229 (+) True G39104
TU52524 other downstream 321752 16517536 ~ 16543580 (+) True G39116
TU52801 other downstream 916329 17112113 ~ 17119890 (+) True G39351
TU52832 other downstream 997437 17193221 ~ 17198217 (+) True srsf3b
TU52833 other downstream 997437 17193221 ~ 17198217 (+) False srsf3b

Expression Profile